Hb_007617_030

Information

Type -
Description -
Location Contig7617: 28175-34554
Sequence    

Annotation

kegg
ID rcu:RCOM_1447420
description laccase, putative (EC:1.10.3.3)
nr
ID KDP41783.1
description hypothetical protein JCGZ_26801 [Jatropha curcas]
swissprot
ID Q8VZA1
description Laccase-11 OS=Arabidopsis thaliana GN=LAC11 PE=2 SV=1
trembl
ID A0A067L3K4
description Laccase OS=Jatropha curcas GN=JCGZ_26801 PE=3 SV=1
Gene Ontology
ID GO:0005618
description laccase-11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57289: 32695-33564 , PASA_asmbl_57290: 34087-34483
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007617_030 0.0 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
2 Hb_001546_140 0.025847574 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
3 Hb_009771_010 0.0378927142 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
4 Hb_001153_170 0.0379413464 - - PREDICTED: protein HOTHEAD [Populus euphratica]
5 Hb_000887_030 0.0459849934 - - serine carboxypeptidase, putative [Ricinus communis]
6 Hb_031862_210 0.0463079587 - - hypothetical protein JCGZ_24955 [Jatropha curcas]
7 Hb_089140_130 0.0478876553 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
8 Hb_000130_340 0.0484700241 - - -
9 Hb_002929_030 0.048708207 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
10 Hb_006594_030 0.0491143006 - - -
11 Hb_031377_010 0.0542237626 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
12 Hb_011316_080 0.056015863 - - Cucumisin precursor, putative [Ricinus communis]
13 Hb_000635_240 0.0581583731 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
14 Hb_001433_210 0.0599683328 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
15 Hb_145502_010 0.0617344136 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82-like [Jatropha curcas]
16 Hb_001646_030 0.0634648778 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
17 Hb_000739_010 0.0667309047 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
18 Hb_002259_120 0.0669685202 - - tonoplast intrinsic protein, putative [Ricinus communis]
19 Hb_147976_010 0.0670910406 - - -
20 Hb_000144_130 0.0689410296 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007617_030 Hb_007617_030 Hb_001546_140 Hb_001546_140 Hb_007617_030--Hb_001546_140 Hb_009771_010 Hb_009771_010 Hb_007617_030--Hb_009771_010 Hb_001153_170 Hb_001153_170 Hb_007617_030--Hb_001153_170 Hb_000887_030 Hb_000887_030 Hb_007617_030--Hb_000887_030 Hb_031862_210 Hb_031862_210 Hb_007617_030--Hb_031862_210 Hb_089140_130 Hb_089140_130 Hb_007617_030--Hb_089140_130 Hb_001546_140--Hb_009771_010 Hb_001546_140--Hb_001153_170 Hb_001546_140--Hb_089140_130 Hb_011316_080 Hb_011316_080 Hb_001546_140--Hb_011316_080 Hb_001433_210 Hb_001433_210 Hb_001546_140--Hb_001433_210 Hb_009771_010--Hb_001153_170 Hb_009771_010--Hb_089140_130 Hb_009771_010--Hb_011316_080 Hb_002929_030 Hb_002929_030 Hb_009771_010--Hb_002929_030 Hb_001153_170--Hb_089140_130 Hb_001153_170--Hb_011316_080 Hb_006594_030 Hb_006594_030 Hb_001153_170--Hb_006594_030 Hb_000887_030--Hb_001546_140 Hb_000887_030--Hb_009771_010 Hb_000887_030--Hb_001153_170 Hb_000887_030--Hb_002929_030 Hb_000887_030--Hb_031862_210 Hb_147976_010 Hb_147976_010 Hb_031862_210--Hb_147976_010 Hb_145502_010 Hb_145502_010 Hb_031862_210--Hb_145502_010 Hb_009692_050 Hb_009692_050 Hb_031862_210--Hb_009692_050 Hb_031862_210--Hb_001433_210 Hb_003598_070 Hb_003598_070 Hb_031862_210--Hb_003598_070 Hb_089140_130--Hb_011316_080 Hb_000847_040 Hb_000847_040 Hb_089140_130--Hb_000847_040 Hb_089140_130--Hb_006594_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00771362 12.5432 3.09601 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 6.44793

CAGE analysis