Hb_000847_040

Information

Type -
Description -
Location Contig847: 48225-49266
Sequence    

Annotation

kegg
ID gmx:100807266
description uncharacterized LOC100807266
nr
ID XP_012085013.1
description PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
swissprot
ID Q9SV72
description EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Arabidopsis thaliana GN=EPFL9 PE=1 SV=1
trembl
ID A0A0B0MP24
description Epidermal patterning factor-like protein 9 OS=Gossypium arboreum GN=F383_23219 PE=4 SV=1
Gene Ontology
ID GO:0007267
description epidermal patterning factor-like protein 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60248: 48262-49224 , PASA_asmbl_60249: 48490-48699
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000847_040 0.0 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
2 Hb_011316_080 0.0255305095 - - Cucumisin precursor, putative [Ricinus communis]
3 Hb_002006_080 0.0277782236 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Citrus sinensis]
4 Hb_089140_130 0.0354880856 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
5 Hb_000979_210 0.0429163979 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001153_170 0.0481029068 - - PREDICTED: protein HOTHEAD [Populus euphratica]
7 Hb_009771_010 0.0484604385 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
8 Hb_025048_050 0.0562718939 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
9 Hb_000635_240 0.0578988148 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
10 Hb_001546_140 0.0606562004 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
11 Hb_002028_070 0.0611045085 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]
12 Hb_001946_070 0.0634093272 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
13 Hb_001033_080 0.0643220712 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
14 Hb_000210_210 0.0662232883 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
15 Hb_006594_030 0.0667522521 - - -
16 Hb_002929_030 0.0683564338 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
17 Hb_001433_210 0.0687073316 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
18 Hb_005357_210 0.0687762672 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
19 Hb_011512_100 0.0689966833 - - PREDICTED: uncharacterized protein LOC105650382 isoform X1 [Jatropha curcas]
20 Hb_000740_010 0.0707299444 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_000847_040 Hb_000847_040 Hb_011316_080 Hb_011316_080 Hb_000847_040--Hb_011316_080 Hb_002006_080 Hb_002006_080 Hb_000847_040--Hb_002006_080 Hb_089140_130 Hb_089140_130 Hb_000847_040--Hb_089140_130 Hb_000979_210 Hb_000979_210 Hb_000847_040--Hb_000979_210 Hb_001153_170 Hb_001153_170 Hb_000847_040--Hb_001153_170 Hb_009771_010 Hb_009771_010 Hb_000847_040--Hb_009771_010 Hb_011316_080--Hb_089140_130 Hb_011316_080--Hb_009771_010 Hb_011316_080--Hb_001153_170 Hb_001546_140 Hb_001546_140 Hb_011316_080--Hb_001546_140 Hb_011316_080--Hb_002006_080 Hb_002006_080--Hb_000979_210 Hb_000740_010 Hb_000740_010 Hb_002006_080--Hb_000740_010 Hb_004235_070 Hb_004235_070 Hb_002006_080--Hb_004235_070 Hb_071557_010 Hb_071557_010 Hb_002006_080--Hb_071557_010 Hb_089140_130--Hb_001153_170 Hb_089140_130--Hb_009771_010 Hb_089140_130--Hb_001546_140 Hb_006594_030 Hb_006594_030 Hb_089140_130--Hb_006594_030 Hb_000979_210--Hb_011316_080 Hb_000210_210 Hb_000210_210 Hb_000979_210--Hb_000210_210 Hb_000979_210--Hb_089140_130 Hb_000635_240 Hb_000635_240 Hb_000979_210--Hb_000635_240 Hb_001153_170--Hb_009771_010 Hb_001153_170--Hb_001546_140 Hb_001153_170--Hb_006594_030 Hb_007617_030 Hb_007617_030 Hb_001153_170--Hb_007617_030 Hb_009771_010--Hb_001546_140 Hb_002929_030 Hb_002929_030 Hb_009771_010--Hb_002929_030 Hb_009771_010--Hb_007617_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 27.8262 3.69384 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 13.3512

CAGE analysis