Hb_000979_210

Information

Type -
Description -
Location Contig979: 214332-215704
Sequence    

Annotation

kegg
ID rcu:RCOM_0629280
description hypothetical protein
nr
ID XP_002527791.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9CAC5
description NAD(P)H-quinone oxidoreductase subunit L, chloroplastic OS=Arabidopsis thaliana GN=ndhL PE=2 SV=1
trembl
ID B9SP72
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0629280 PE=4 SV=1
Gene Ontology
ID GO:0009535
description inorganic carbon transport isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64316: 214373-215618
cDNA
(Sanger)
(ID:Location)		 017_A18.ab1: 214373-215506 , 032_M02.ab1: 214441-215591

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000979_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002006_080 0.0428618108 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Citrus sinensis]
3 Hb_000847_040 0.0429163979 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
4 Hb_011316_080 0.0462626605 - - Cucumisin precursor, putative [Ricinus communis]
5 Hb_000210_210 0.050830265 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
6 Hb_089140_130 0.0571298373 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
7 Hb_000635_240 0.0579378034 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
8 Hb_004235_070 0.0587436381 - - acyl carrier protein, putative [Ricinus communis]
9 Hb_011512_100 0.0593334153 - - PREDICTED: uncharacterized protein LOC105650382 isoform X1 [Jatropha curcas]
10 Hb_009771_010 0.0622383711 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
11 Hb_001153_170 0.0638010153 - - PREDICTED: protein HOTHEAD [Populus euphratica]
12 Hb_006261_020 0.0660792487 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
13 Hb_001546_140 0.0674938142 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
14 Hb_004627_050 0.0689825747 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
15 Hb_001433_210 0.0696272055 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
16 Hb_000740_010 0.0698176075 - - cytochrome P450, putative [Ricinus communis]
17 Hb_001638_060 0.0701701016 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
18 Hb_002929_030 0.0710262355 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
19 Hb_002245_050 0.0731065507 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
20 Hb_000836_620 0.0744551441 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000979_210 Hb_000979_210 Hb_002006_080 Hb_002006_080 Hb_000979_210--Hb_002006_080 Hb_000847_040 Hb_000847_040 Hb_000979_210--Hb_000847_040 Hb_011316_080 Hb_011316_080 Hb_000979_210--Hb_011316_080 Hb_000210_210 Hb_000210_210 Hb_000979_210--Hb_000210_210 Hb_089140_130 Hb_089140_130 Hb_000979_210--Hb_089140_130 Hb_000635_240 Hb_000635_240 Hb_000979_210--Hb_000635_240 Hb_002006_080--Hb_000847_040 Hb_002006_080--Hb_011316_080 Hb_000740_010 Hb_000740_010 Hb_002006_080--Hb_000740_010 Hb_004235_070 Hb_004235_070 Hb_002006_080--Hb_004235_070 Hb_071557_010 Hb_071557_010 Hb_002006_080--Hb_071557_010 Hb_000847_040--Hb_011316_080 Hb_000847_040--Hb_089140_130 Hb_001153_170 Hb_001153_170 Hb_000847_040--Hb_001153_170 Hb_009771_010 Hb_009771_010 Hb_000847_040--Hb_009771_010 Hb_011316_080--Hb_089140_130 Hb_011316_080--Hb_009771_010 Hb_011316_080--Hb_001153_170 Hb_001546_140 Hb_001546_140 Hb_011316_080--Hb_001546_140 Hb_001638_060 Hb_001638_060 Hb_000210_210--Hb_001638_060 Hb_000210_210--Hb_004235_070 Hb_006261_020 Hb_006261_020 Hb_000210_210--Hb_006261_020 Hb_000210_210--Hb_002006_080 Hb_000836_620 Hb_000836_620 Hb_000210_210--Hb_000836_620 Hb_089140_130--Hb_001153_170 Hb_089140_130--Hb_009771_010 Hb_089140_130--Hb_001546_140 Hb_006594_030 Hb_006594_030 Hb_089140_130--Hb_006594_030 Hb_000635_240--Hb_011316_080 Hb_000635_240--Hb_001546_140 Hb_000635_240--Hb_009771_010 Hb_002245_050 Hb_002245_050 Hb_000635_240--Hb_002245_050 Hb_001433_210 Hb_001433_210 Hb_000635_240--Hb_001433_210 Hb_002929_030 Hb_002929_030 Hb_000635_240--Hb_002929_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0627811 58.0611 7.8456 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.114953 0.0452006 0.0826113 0 30.2806

CAGE analysis