Hb_000210_210

Information

Type -
Description -
Location Contig210: 252772-255210
Sequence    

Annotation

kegg
ID rcu:RCOM_0437740
description hypothetical protein
nr
ID XP_012074332.1
description PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KWA5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08768 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21752: 252827-255292
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000210_210 0.0 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
2 Hb_000979_210 0.050830265 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001638_060 0.0532895041 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
4 Hb_004235_070 0.0534189408 - - acyl carrier protein, putative [Ricinus communis]
5 Hb_006261_020 0.0534473467 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
6 Hb_002006_080 0.0557814018 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Citrus sinensis]
7 Hb_000836_620 0.0623961493 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
8 Hb_000740_010 0.0646537181 - - cytochrome P450, putative [Ricinus communis]
9 Hb_000847_040 0.0662232883 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
10 Hb_000635_240 0.0691972841 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
11 Hb_071557_010 0.0709469973 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
12 Hb_011316_080 0.0712993779 - - Cucumisin precursor, putative [Ricinus communis]
13 Hb_015807_120 0.0721434098 - - PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Jatropha curcas]
14 Hb_011512_100 0.0727359711 - - PREDICTED: uncharacterized protein LOC105650382 isoform X1 [Jatropha curcas]
15 Hb_048476_090 0.0739387003 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000414_040 0.0749671391 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
17 Hb_004627_050 0.0762248056 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
18 Hb_002078_280 0.0775518887 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
19 Hb_002259_020 0.0780242704 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
20 Hb_001433_210 0.0809500268 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]

Gene co-expression network

sample Hb_000210_210 Hb_000210_210 Hb_000979_210 Hb_000979_210 Hb_000210_210--Hb_000979_210 Hb_001638_060 Hb_001638_060 Hb_000210_210--Hb_001638_060 Hb_004235_070 Hb_004235_070 Hb_000210_210--Hb_004235_070 Hb_006261_020 Hb_006261_020 Hb_000210_210--Hb_006261_020 Hb_002006_080 Hb_002006_080 Hb_000210_210--Hb_002006_080 Hb_000836_620 Hb_000836_620 Hb_000210_210--Hb_000836_620 Hb_000979_210--Hb_002006_080 Hb_000847_040 Hb_000847_040 Hb_000979_210--Hb_000847_040 Hb_011316_080 Hb_011316_080 Hb_000979_210--Hb_011316_080 Hb_089140_130 Hb_089140_130 Hb_000979_210--Hb_089140_130 Hb_000635_240 Hb_000635_240 Hb_000979_210--Hb_000635_240 Hb_001638_060--Hb_004235_070 Hb_015807_120 Hb_015807_120 Hb_001638_060--Hb_015807_120 Hb_001638_060--Hb_006261_020 Hb_000821_030 Hb_000821_030 Hb_001638_060--Hb_000821_030 Hb_000030_070 Hb_000030_070 Hb_001638_060--Hb_000030_070 Hb_004235_070--Hb_006261_020 Hb_000740_010 Hb_000740_010 Hb_004235_070--Hb_000740_010 Hb_004235_070--Hb_015807_120 Hb_071557_010 Hb_071557_010 Hb_004235_070--Hb_071557_010 Hb_004235_070--Hb_002006_080 Hb_006261_020--Hb_000740_010 Hb_048476_090 Hb_048476_090 Hb_006261_020--Hb_048476_090 Hb_006261_020--Hb_015807_120 Hb_006261_020--Hb_071557_010 Hb_002006_080--Hb_000847_040 Hb_002006_080--Hb_011316_080 Hb_002006_080--Hb_000740_010 Hb_002006_080--Hb_071557_010 Hb_003750_110 Hb_003750_110 Hb_000836_620--Hb_003750_110 Hb_002929_030 Hb_002929_030 Hb_000836_620--Hb_002929_030 Hb_001433_210 Hb_001433_210 Hb_000836_620--Hb_001433_210 Hb_000836_620--Hb_000635_240 Hb_000142_050 Hb_000142_050 Hb_000836_620--Hb_000142_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0561018 0.0412039 27.3517 3.34398 0 0.0248721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.05138 0.0404098 0 0.0650202 15.6119

CAGE analysis