Hb_000836_620

Information

Type -
Description -
Location Contig836: 479524-481754
Sequence    

Annotation

kegg
ID pop:POPTR_0011s12300g
description POPTRDRAFT_568934; NADPH-protochlorophyllide oxidoreductase family protein
nr
ID XP_012084920.1
description PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
swissprot
ID Q41249
description Protochlorophyllide reductase, chloroplastic OS=Cucumis sativus GN=PORA PE=2 SV=1
trembl
ID A0A067K442
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20960 PE=4 SV=1
Gene Ontology
ID GO:0009507
description protochlorophyllide chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60000: 479795-481754 , PASA_asmbl_60001: 482307-490660
cDNA
(Sanger)
(ID:Location)		 008_L16.ab1: 482307-482864 , 013_I18.ab1: 480787-481753 , 014_O06.ab1: 480745-481754 , 021_F12.ab1: 482307-482864 , 022_J23.ab1: 480809-481754 , 026_A23.ab1: 480805-481752

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_620 0.0 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
2 Hb_003750_110 0.0541854165 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
3 Hb_002929_030 0.0558644845 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
4 Hb_001433_210 0.0613510536 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
5 Hb_000635_240 0.0621856638 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
6 Hb_000210_210 0.0623961493 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
7 Hb_000142_050 0.0666177471 - - PREDICTED: beta-glucosidase 18-like isoform X1 [Populus euphratica]
8 Hb_009771_010 0.0669331787 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
9 Hb_000414_040 0.0678283046 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
10 Hb_001546_140 0.0685158732 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
11 Hb_000174_120 0.068894765 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
12 Hb_002245_050 0.0694787075 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
13 Hb_001638_060 0.0699610306 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
14 Hb_000887_030 0.0706656993 - - serine carboxypeptidase, putative [Ricinus communis]
15 Hb_011316_080 0.071194695 - - Cucumisin precursor, putative [Ricinus communis]
16 Hb_000821_030 0.0713691079 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
17 Hb_009692_050 0.0728879773 - - -
18 Hb_000979_210 0.0744551441 - - conserved hypothetical protein [Ricinus communis]
19 Hb_031862_210 0.0778486917 - - hypothetical protein JCGZ_24955 [Jatropha curcas]
20 Hb_089140_130 0.0779273859 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]

Gene co-expression network

sample Hb_000836_620 Hb_000836_620 Hb_003750_110 Hb_003750_110 Hb_000836_620--Hb_003750_110 Hb_002929_030 Hb_002929_030 Hb_000836_620--Hb_002929_030 Hb_001433_210 Hb_001433_210 Hb_000836_620--Hb_001433_210 Hb_000635_240 Hb_000635_240 Hb_000836_620--Hb_000635_240 Hb_000210_210 Hb_000210_210 Hb_000836_620--Hb_000210_210 Hb_000142_050 Hb_000142_050 Hb_000836_620--Hb_000142_050 Hb_005460_040 Hb_005460_040 Hb_003750_110--Hb_005460_040 Hb_001374_050 Hb_001374_050 Hb_003750_110--Hb_001374_050 Hb_003750_110--Hb_000142_050 Hb_000080_070 Hb_000080_070 Hb_003750_110--Hb_000080_070 Hb_002042_090 Hb_002042_090 Hb_003750_110--Hb_002042_090 Hb_009771_010 Hb_009771_010 Hb_002929_030--Hb_009771_010 Hb_001546_140 Hb_001546_140 Hb_002929_030--Hb_001546_140 Hb_001153_170 Hb_001153_170 Hb_002929_030--Hb_001153_170 Hb_002929_030--Hb_000635_240 Hb_007617_030 Hb_007617_030 Hb_002929_030--Hb_007617_030 Hb_089140_130 Hb_089140_130 Hb_002929_030--Hb_089140_130 Hb_009692_050 Hb_009692_050 Hb_001433_210--Hb_009692_050 Hb_000414_040 Hb_000414_040 Hb_001433_210--Hb_000414_040 Hb_001433_210--Hb_001546_140 Hb_147976_010 Hb_147976_010 Hb_001433_210--Hb_147976_010 Hb_031862_210 Hb_031862_210 Hb_001433_210--Hb_031862_210 Hb_000174_120 Hb_000174_120 Hb_001433_210--Hb_000174_120 Hb_011316_080 Hb_011316_080 Hb_000635_240--Hb_011316_080 Hb_000635_240--Hb_001546_140 Hb_000635_240--Hb_009771_010 Hb_002245_050 Hb_002245_050 Hb_000635_240--Hb_002245_050 Hb_000635_240--Hb_001433_210 Hb_000979_210 Hb_000979_210 Hb_000210_210--Hb_000979_210 Hb_001638_060 Hb_001638_060 Hb_000210_210--Hb_001638_060 Hb_004235_070 Hb_004235_070 Hb_000210_210--Hb_004235_070 Hb_006261_020 Hb_006261_020 Hb_000210_210--Hb_006261_020 Hb_002006_080 Hb_002006_080 Hb_000210_210--Hb_002006_080 Hb_000018_110 Hb_000018_110 Hb_000142_050--Hb_000018_110 Hb_145502_010 Hb_145502_010 Hb_000142_050--Hb_145502_010 Hb_000142_050--Hb_002245_050 Hb_000142_050--Hb_009692_050 Hb_000142_050--Hb_000174_120 Hb_000142_050--Hb_001433_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.165783 0.159457 124.421 23.2224 0.0111403 0.0454841
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0541465 0.0213006 0.0401977 1.12902 76.2132

CAGE analysis