Hb_005460_040

Information

Type -
Description -
Location Contig5460: 55981-61901
Sequence    

Annotation

kegg
ID rcu:RCOM_0938700
description acyl CoA synthetase, putative (EC:6.2.1.3)
nr
ID XP_012069337.1
description PREDICTED: long chain acyl-CoA synthetase 2 [Jatropha curcas]
swissprot
ID Q9XIA9
description Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana GN=LACS2 PE=2 SV=1
trembl
ID A0A067LCT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10037 PE=4 SV=1
Gene Ontology
ID GO:0009506
description long chain acyl- synthetase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47979: 56016-61977 , PASA_asmbl_47981: 59842-60070 , PASA_asmbl_47982: 56016-61977 , PASA_asmbl_47983: 58362-58762
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005460_040 0.0 - - PREDICTED: long chain acyl-CoA synthetase 2 [Jatropha curcas]
2 Hb_004553_050 0.0369545251 - - PREDICTED: probable inactive receptor kinase At5g10020 [Jatropha curcas]
3 Hb_001374_050 0.0530182411 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
4 Hb_002042_090 0.0657475534 - - PREDICTED: root phototropism protein 3-like [Jatropha curcas]
5 Hb_001300_190 0.0691099498 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001789_220 0.0729946538 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]
7 Hb_001166_010 0.0738172107 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
8 Hb_003750_110 0.074803178 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
9 Hb_011930_190 0.0771806527 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
10 Hb_001253_050 0.0801357276 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
11 Hb_001205_140 0.080283196 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
12 Hb_007853_030 0.0811901383 - - structural molecule, putative [Ricinus communis]
13 Hb_009476_030 0.0818273603 - - fatty acid desaturase [Manihot esculenta]
14 Hb_002929_030 0.0824058514 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
15 Hb_031377_010 0.0837619863 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
16 Hb_000144_130 0.0841448731 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000836_620 0.0863811733 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
18 Hb_145502_010 0.0868086036 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82-like [Jatropha curcas]
19 Hb_000510_250 0.0869971269 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
20 Hb_007617_030 0.0871966981 - - hypothetical protein JCGZ_26801 [Jatropha curcas]

Gene co-expression network

sample Hb_005460_040 Hb_005460_040 Hb_004553_050 Hb_004553_050 Hb_005460_040--Hb_004553_050 Hb_001374_050 Hb_001374_050 Hb_005460_040--Hb_001374_050 Hb_002042_090 Hb_002042_090 Hb_005460_040--Hb_002042_090 Hb_001300_190 Hb_001300_190 Hb_005460_040--Hb_001300_190 Hb_001789_220 Hb_001789_220 Hb_005460_040--Hb_001789_220 Hb_001166_010 Hb_001166_010 Hb_005460_040--Hb_001166_010 Hb_004553_050--Hb_001374_050 Hb_004553_050--Hb_001300_190 Hb_004553_050--Hb_001789_220 Hb_001253_050 Hb_001253_050 Hb_004553_050--Hb_001253_050 Hb_001205_140 Hb_001205_140 Hb_004553_050--Hb_001205_140 Hb_003750_110 Hb_003750_110 Hb_001374_050--Hb_003750_110 Hb_001374_050--Hb_001300_190 Hb_000836_620 Hb_000836_620 Hb_001374_050--Hb_000836_620 Hb_001374_050--Hb_001205_140 Hb_009476_030 Hb_009476_030 Hb_002042_090--Hb_009476_030 Hb_002042_090--Hb_001789_220 Hb_002042_090--Hb_001205_140 Hb_007853_030 Hb_007853_030 Hb_002042_090--Hb_007853_030 Hb_005345_020 Hb_005345_020 Hb_002042_090--Hb_005345_020 Hb_000210_030 Hb_000210_030 Hb_002042_090--Hb_000210_030 Hb_000739_010 Hb_000739_010 Hb_001300_190--Hb_000739_010 Hb_001646_030 Hb_001646_030 Hb_001300_190--Hb_001646_030 Hb_002259_120 Hb_002259_120 Hb_001300_190--Hb_002259_120 Hb_012675_040 Hb_012675_040 Hb_001300_190--Hb_012675_040 Hb_012807_040 Hb_012807_040 Hb_001300_190--Hb_012807_040 Hb_001789_220--Hb_001205_140 Hb_041433_010 Hb_041433_010 Hb_001789_220--Hb_041433_010 Hb_006117_030 Hb_006117_030 Hb_001789_220--Hb_006117_030 Hb_001789_220--Hb_005345_020 Hb_007681_010 Hb_007681_010 Hb_001789_220--Hb_007681_010 Hb_001166_010--Hb_007853_030 Hb_000144_130 Hb_000144_130 Hb_001166_010--Hb_000144_130 Hb_002044_100 Hb_002044_100 Hb_001166_010--Hb_002044_100 Hb_031377_010 Hb_031377_010 Hb_001166_010--Hb_031377_010 Hb_000510_250 Hb_000510_250 Hb_001166_010--Hb_000510_250 Hb_019053_040 Hb_019053_040 Hb_001166_010--Hb_019053_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00880008 1.20687 199.227 62.8921 0.0170483 0.147874
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.159884 0.125806 0.0897128 3.3939 116.541

CAGE analysis