Hb_002259_120

Information

Type -
Description -
Location Contig2259: 89146-90093
Sequence    

Annotation

kegg
ID rcu:RCOM_0612670
description tonoplast intrinsic protein, putative
nr
ID XP_002525663.1
description tonoplast intrinsic protein, putative [Ricinus communis]
swissprot
ID O22588
description Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1
trembl
ID B9SI44
description Tonoplast intrinsic protein, putative OS=Ricinus communis GN=RCOM_0612670 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable aquaporin tip3-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002259_120 0.0 - - tonoplast intrinsic protein, putative [Ricinus communis]
2 Hb_001646_030 0.0239541876 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
3 Hb_000739_010 0.0262533831 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
4 Hb_000130_340 0.0367769731 - - -
5 Hb_012675_040 0.0408139072 - - PREDICTED: uncharacterized protein LOC105647773 isoform X1 [Jatropha curcas]
6 Hb_167188_020 0.0537552165 - - PREDICTED: uncharacterized protein At1g05835 [Jatropha curcas]
7 Hb_001300_190 0.0545447402 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012807_040 0.0573130013 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
9 Hb_000510_250 0.0587409225 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
10 Hb_002893_220 0.0598029704 - - hypothetical protein B456_001G004300 [Gossypium raimondii]
11 Hb_000144_130 0.0637327704 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001253_050 0.0641945301 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
13 Hb_007617_030 0.0669685202 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
14 Hb_000160_020 0.0684907348 - - PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Jatropha curcas]
15 Hb_031377_010 0.0728995172 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
16 Hb_088689_010 0.0738151751 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
17 Hb_008173_160 0.0738470312 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
18 Hb_002973_100 0.0754983619 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Populus euphratica]
19 Hb_000189_300 0.0768939123 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
20 Hb_001221_550 0.077052074 - - Corticosteroid 11-beta-dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002259_120 Hb_002259_120 Hb_001646_030 Hb_001646_030 Hb_002259_120--Hb_001646_030 Hb_000739_010 Hb_000739_010 Hb_002259_120--Hb_000739_010 Hb_000130_340 Hb_000130_340 Hb_002259_120--Hb_000130_340 Hb_012675_040 Hb_012675_040 Hb_002259_120--Hb_012675_040 Hb_167188_020 Hb_167188_020 Hb_002259_120--Hb_167188_020 Hb_001300_190 Hb_001300_190 Hb_002259_120--Hb_001300_190 Hb_001646_030--Hb_000739_010 Hb_012807_040 Hb_012807_040 Hb_001646_030--Hb_012807_040 Hb_001646_030--Hb_012675_040 Hb_001253_050 Hb_001253_050 Hb_001646_030--Hb_001253_050 Hb_000160_020 Hb_000160_020 Hb_001646_030--Hb_000160_020 Hb_000739_010--Hb_012807_040 Hb_000739_010--Hb_012675_040 Hb_000739_010--Hb_001253_050 Hb_000739_010--Hb_000160_020 Hb_007617_030 Hb_007617_030 Hb_000130_340--Hb_007617_030 Hb_006594_030 Hb_006594_030 Hb_000130_340--Hb_006594_030 Hb_000130_340--Hb_001646_030 Hb_000130_340--Hb_000739_010 Hb_031377_010 Hb_031377_010 Hb_000130_340--Hb_031377_010 Hb_012675_040--Hb_167188_020 Hb_012675_040--Hb_012807_040 Hb_012675_040--Hb_001300_190 Hb_006711_030 Hb_006711_030 Hb_167188_020--Hb_006711_030 Hb_000089_170 Hb_000089_170 Hb_167188_020--Hb_000089_170 Hb_002893_220 Hb_002893_220 Hb_167188_020--Hb_002893_220 Hb_002307_140 Hb_002307_140 Hb_167188_020--Hb_002307_140 Hb_001300_190--Hb_000739_010 Hb_001300_190--Hb_001646_030 Hb_004553_050 Hb_004553_050 Hb_001300_190--Hb_004553_050 Hb_001300_190--Hb_012807_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.267179 0.0950499 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.123997

CAGE analysis