Hb_000130_340

Information

Type -
Description -
Location Contig130: 312667-312993
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08928: 310060-313030
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_340 0.0 - - -
2 Hb_002259_120 0.0367769731 - - tonoplast intrinsic protein, putative [Ricinus communis]
3 Hb_007617_030 0.0484700241 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
4 Hb_006594_030 0.0500802693 - - -
5 Hb_001646_030 0.0515631805 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
6 Hb_000739_010 0.0552684665 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
7 Hb_031377_010 0.0615443188 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
8 Hb_000144_130 0.063027086 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002893_220 0.0631170206 - - hypothetical protein B456_001G004300 [Gossypium raimondii]
10 Hb_001671_070 0.0636946066 - - kinase, putative [Ricinus communis]
11 Hb_001221_550 0.0637628598 - - Corticosteroid 11-beta-dehydrogenase, putative [Ricinus communis]
12 Hb_000167_150 0.0654314596 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
13 Hb_001153_170 0.0656475929 - - PREDICTED: protein HOTHEAD [Populus euphratica]
14 Hb_000136_120 0.0663870815 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
15 Hb_001546_140 0.0688070432 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
16 Hb_000510_250 0.0693316237 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
17 Hb_009771_010 0.0715103879 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
18 Hb_006586_060 0.0723743015 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
19 Hb_001300_190 0.0754543698 - - conserved hypothetical protein [Ricinus communis]
20 Hb_012675_040 0.0757962528 - - PREDICTED: uncharacterized protein LOC105647773 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000130_340 Hb_000130_340 Hb_002259_120 Hb_002259_120 Hb_000130_340--Hb_002259_120 Hb_007617_030 Hb_007617_030 Hb_000130_340--Hb_007617_030 Hb_006594_030 Hb_006594_030 Hb_000130_340--Hb_006594_030 Hb_001646_030 Hb_001646_030 Hb_000130_340--Hb_001646_030 Hb_000739_010 Hb_000739_010 Hb_000130_340--Hb_000739_010 Hb_031377_010 Hb_031377_010 Hb_000130_340--Hb_031377_010 Hb_002259_120--Hb_001646_030 Hb_002259_120--Hb_000739_010 Hb_012675_040 Hb_012675_040 Hb_002259_120--Hb_012675_040 Hb_167188_020 Hb_167188_020 Hb_002259_120--Hb_167188_020 Hb_001300_190 Hb_001300_190 Hb_002259_120--Hb_001300_190 Hb_001546_140 Hb_001546_140 Hb_007617_030--Hb_001546_140 Hb_009771_010 Hb_009771_010 Hb_007617_030--Hb_009771_010 Hb_001153_170 Hb_001153_170 Hb_007617_030--Hb_001153_170 Hb_000887_030 Hb_000887_030 Hb_007617_030--Hb_000887_030 Hb_031862_210 Hb_031862_210 Hb_007617_030--Hb_031862_210 Hb_089140_130 Hb_089140_130 Hb_007617_030--Hb_089140_130 Hb_000136_120 Hb_000136_120 Hb_006594_030--Hb_000136_120 Hb_000167_150 Hb_000167_150 Hb_006594_030--Hb_000167_150 Hb_006594_030--Hb_001153_170 Hb_006594_030--Hb_089140_130 Hb_006594_030--Hb_009771_010 Hb_006594_030--Hb_007617_030 Hb_001646_030--Hb_000739_010 Hb_012807_040 Hb_012807_040 Hb_001646_030--Hb_012807_040 Hb_001646_030--Hb_012675_040 Hb_001253_050 Hb_001253_050 Hb_001646_030--Hb_001253_050 Hb_000160_020 Hb_000160_020 Hb_001646_030--Hb_000160_020 Hb_000739_010--Hb_012807_040 Hb_000739_010--Hb_012675_040 Hb_000739_010--Hb_001253_050 Hb_000739_010--Hb_000160_020 Hb_000144_130 Hb_000144_130 Hb_031377_010--Hb_000144_130 Hb_001671_070 Hb_001671_070 Hb_031377_010--Hb_001671_070 Hb_000172_660 Hb_000172_660 Hb_031377_010--Hb_000172_660 Hb_002044_100 Hb_002044_100 Hb_031377_010--Hb_002044_100 Hb_031377_010--Hb_007617_030 Hb_000510_250 Hb_000510_250 Hb_031377_010--Hb_000510_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 5.49778 1.55398 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.32429

CAGE analysis