Hb_001300_190

Information

Type -
Description -
Location Contig1300: 130651-131022
Sequence    

Annotation

kegg
ID rcu:RCOM_0556510
description hypothetical protein
nr
ID XP_002520688.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S3W9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0556510 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001300_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000739_010 0.0488244925 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
3 Hb_001646_030 0.0492965893 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
4 Hb_004553_050 0.0534654345 - - PREDICTED: probable inactive receptor kinase At5g10020 [Jatropha curcas]
5 Hb_002259_120 0.0545447402 - - tonoplast intrinsic protein, putative [Ricinus communis]
6 Hb_012675_040 0.057075275 - - PREDICTED: uncharacterized protein LOC105647773 isoform X1 [Jatropha curcas]
7 Hb_012807_040 0.0581236646 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
8 Hb_001253_050 0.0638845948 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
9 Hb_000160_020 0.0685376136 - - PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Jatropha curcas]
10 Hb_005460_040 0.0691099498 - - PREDICTED: long chain acyl-CoA synthetase 2 [Jatropha curcas]
11 Hb_088689_010 0.0692880768 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
12 Hb_008173_160 0.0693227025 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
13 Hb_000189_300 0.0696942558 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
14 Hb_002973_100 0.0710119867 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Populus euphratica]
15 Hb_167188_020 0.0739070499 - - PREDICTED: uncharacterized protein At1g05835 [Jatropha curcas]
16 Hb_000130_340 0.0754543698 - - -
17 Hb_000510_250 0.0757447657 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
18 Hb_007894_200 0.0781314887 - - ubiquitin-conjugating enzyme variant, putative [Ricinus communis]
19 Hb_001374_050 0.0790333427 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
20 Hb_001728_070 0.0847792387 - - PREDICTED: probable glycosyltransferase At3g07620 [Jatropha curcas]

Gene co-expression network

sample Hb_001300_190 Hb_001300_190 Hb_000739_010 Hb_000739_010 Hb_001300_190--Hb_000739_010 Hb_001646_030 Hb_001646_030 Hb_001300_190--Hb_001646_030 Hb_004553_050 Hb_004553_050 Hb_001300_190--Hb_004553_050 Hb_002259_120 Hb_002259_120 Hb_001300_190--Hb_002259_120 Hb_012675_040 Hb_012675_040 Hb_001300_190--Hb_012675_040 Hb_012807_040 Hb_012807_040 Hb_001300_190--Hb_012807_040 Hb_000739_010--Hb_001646_030 Hb_000739_010--Hb_002259_120 Hb_000739_010--Hb_012807_040 Hb_000739_010--Hb_012675_040 Hb_001253_050 Hb_001253_050 Hb_000739_010--Hb_001253_050 Hb_000160_020 Hb_000160_020 Hb_000739_010--Hb_000160_020 Hb_001646_030--Hb_002259_120 Hb_001646_030--Hb_012807_040 Hb_001646_030--Hb_012675_040 Hb_001646_030--Hb_001253_050 Hb_001646_030--Hb_000160_020 Hb_001374_050 Hb_001374_050 Hb_004553_050--Hb_001374_050 Hb_005460_040 Hb_005460_040 Hb_004553_050--Hb_005460_040 Hb_001789_220 Hb_001789_220 Hb_004553_050--Hb_001789_220 Hb_004553_050--Hb_001253_050 Hb_001205_140 Hb_001205_140 Hb_004553_050--Hb_001205_140 Hb_000130_340 Hb_000130_340 Hb_002259_120--Hb_000130_340 Hb_002259_120--Hb_012675_040 Hb_167188_020 Hb_167188_020 Hb_002259_120--Hb_167188_020 Hb_012675_040--Hb_167188_020 Hb_012675_040--Hb_012807_040 Hb_088689_010 Hb_088689_010 Hb_012807_040--Hb_088689_010 Hb_008173_160 Hb_008173_160 Hb_012807_040--Hb_008173_160 Hb_002973_100 Hb_002973_100 Hb_012807_040--Hb_002973_100 Hb_012807_040--Hb_001253_050 Hb_012807_040--Hb_000160_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 17.5041 6.85067 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.15743 9.28156

CAGE analysis