Hb_001646_030

Information

Type -
Description -
Location Contig1646: 64759-68044
Sequence    

Annotation

kegg
ID cic:CICLE_v10016164mg
description hypothetical protein
nr
ID XP_012080705.1
description PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
swissprot
ID Q69KJ0
description Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica GN=Os06g0358800 PE=2 SV=1
trembl
ID A0A067K3V1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13725 PE=4 SV=1
Gene Ontology
ID GO:0003723
description ribonuclease 3-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001646_030 0.0 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
2 Hb_000739_010 0.0038592928 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
3 Hb_002259_120 0.0239541876 - - tonoplast intrinsic protein, putative [Ricinus communis]
4 Hb_012807_040 0.0347849212 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
5 Hb_012675_040 0.0388160668 - - PREDICTED: uncharacterized protein LOC105647773 isoform X1 [Jatropha curcas]
6 Hb_001253_050 0.0423611361 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
7 Hb_000160_020 0.0466378277 - - PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Jatropha curcas]
8 Hb_001300_190 0.0492965893 - - conserved hypothetical protein [Ricinus communis]
9 Hb_088689_010 0.0502557568 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
10 Hb_008173_160 0.0502789957 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
11 Hb_000130_340 0.0515631805 - - -
12 Hb_002973_100 0.0516858278 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Populus euphratica]
13 Hb_007894_200 0.0618561072 - - ubiquitin-conjugating enzyme variant, putative [Ricinus communis]
14 Hb_000189_300 0.0619713195 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
15 Hb_007617_030 0.0634648778 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
16 Hb_000510_250 0.0638953253 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
17 Hb_167188_020 0.0640692792 - - PREDICTED: uncharacterized protein At1g05835 [Jatropha curcas]
18 Hb_000144_130 0.067647164 - - conserved hypothetical protein [Ricinus communis]
19 Hb_031862_210 0.0716652931 - - hypothetical protein JCGZ_24955 [Jatropha curcas]
20 Hb_001728_070 0.0730908605 - - PREDICTED: probable glycosyltransferase At3g07620 [Jatropha curcas]

Gene co-expression network

sample Hb_001646_030 Hb_001646_030 Hb_000739_010 Hb_000739_010 Hb_001646_030--Hb_000739_010 Hb_002259_120 Hb_002259_120 Hb_001646_030--Hb_002259_120 Hb_012807_040 Hb_012807_040 Hb_001646_030--Hb_012807_040 Hb_012675_040 Hb_012675_040 Hb_001646_030--Hb_012675_040 Hb_001253_050 Hb_001253_050 Hb_001646_030--Hb_001253_050 Hb_000160_020 Hb_000160_020 Hb_001646_030--Hb_000160_020 Hb_000739_010--Hb_002259_120 Hb_000739_010--Hb_012807_040 Hb_000739_010--Hb_012675_040 Hb_000739_010--Hb_001253_050 Hb_000739_010--Hb_000160_020 Hb_000130_340 Hb_000130_340 Hb_002259_120--Hb_000130_340 Hb_002259_120--Hb_012675_040 Hb_167188_020 Hb_167188_020 Hb_002259_120--Hb_167188_020 Hb_001300_190 Hb_001300_190 Hb_002259_120--Hb_001300_190 Hb_088689_010 Hb_088689_010 Hb_012807_040--Hb_088689_010 Hb_008173_160 Hb_008173_160 Hb_012807_040--Hb_008173_160 Hb_002973_100 Hb_002973_100 Hb_012807_040--Hb_002973_100 Hb_012807_040--Hb_001253_050 Hb_012807_040--Hb_000160_020 Hb_012675_040--Hb_167188_020 Hb_012675_040--Hb_012807_040 Hb_012675_040--Hb_001300_190 Hb_001253_050--Hb_002973_100 Hb_001253_050--Hb_008173_160 Hb_001253_050--Hb_088689_010 Hb_001253_050--Hb_000160_020 Hb_007894_200 Hb_007894_200 Hb_001253_050--Hb_007894_200 Hb_000160_020--Hb_002973_100 Hb_000160_020--Hb_008173_160 Hb_000160_020--Hb_088689_010 Hb_000160_020--Hb_007894_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.165592 0.061151 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.087819

CAGE analysis