Hb_000739_010

Information

Type -
Description -
Location Contig739: 8533-11835
Sequence    

Annotation

kegg
ID vvi:100255855
description serine carboxypeptidase II-3-like
nr
ID XP_002282331.1
description PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
swissprot
ID P52711
description Serine carboxypeptidase II-3 OS=Hordeum vulgare GN=CXP;2-3 PE=2 SV=1
trembl
ID F6H1D7
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g11100 PE=4 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase ii-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56282: 8569-9868 , PASA_asmbl_56283: 10675-11678
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000739_010 0.0 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
2 Hb_001646_030 0.0038592928 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
3 Hb_002259_120 0.0262533831 - - tonoplast intrinsic protein, putative [Ricinus communis]
4 Hb_012807_040 0.031558778 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
5 Hb_012675_040 0.0365843877 - - PREDICTED: uncharacterized protein LOC105647773 isoform X1 [Jatropha curcas]
6 Hb_001253_050 0.0412410849 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
7 Hb_000160_020 0.0451274989 - - PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Jatropha curcas]
8 Hb_088689_010 0.0476096925 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
9 Hb_008173_160 0.0476403902 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
10 Hb_001300_190 0.0488244925 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002973_100 0.0493372968 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Populus euphratica]
12 Hb_000130_340 0.0552684665 - - -
13 Hb_007894_200 0.0594087817 - - ubiquitin-conjugating enzyme variant, putative [Ricinus communis]
14 Hb_000189_300 0.0599804746 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
15 Hb_167188_020 0.0627685679 - - PREDICTED: uncharacterized protein At1g05835 [Jatropha curcas]
16 Hb_000510_250 0.0647948918 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
17 Hb_007617_030 0.0667309047 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
18 Hb_000144_130 0.0694893961 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001728_070 0.0697890234 - - PREDICTED: probable glycosyltransferase At3g07620 [Jatropha curcas]
20 Hb_031862_210 0.0730544334 - - hypothetical protein JCGZ_24955 [Jatropha curcas]

Gene co-expression network

sample Hb_000739_010 Hb_000739_010 Hb_001646_030 Hb_001646_030 Hb_000739_010--Hb_001646_030 Hb_002259_120 Hb_002259_120 Hb_000739_010--Hb_002259_120 Hb_012807_040 Hb_012807_040 Hb_000739_010--Hb_012807_040 Hb_012675_040 Hb_012675_040 Hb_000739_010--Hb_012675_040 Hb_001253_050 Hb_001253_050 Hb_000739_010--Hb_001253_050 Hb_000160_020 Hb_000160_020 Hb_000739_010--Hb_000160_020 Hb_001646_030--Hb_002259_120 Hb_001646_030--Hb_012807_040 Hb_001646_030--Hb_012675_040 Hb_001646_030--Hb_001253_050 Hb_001646_030--Hb_000160_020 Hb_000130_340 Hb_000130_340 Hb_002259_120--Hb_000130_340 Hb_002259_120--Hb_012675_040 Hb_167188_020 Hb_167188_020 Hb_002259_120--Hb_167188_020 Hb_001300_190 Hb_001300_190 Hb_002259_120--Hb_001300_190 Hb_088689_010 Hb_088689_010 Hb_012807_040--Hb_088689_010 Hb_008173_160 Hb_008173_160 Hb_012807_040--Hb_008173_160 Hb_002973_100 Hb_002973_100 Hb_012807_040--Hb_002973_100 Hb_012807_040--Hb_001253_050 Hb_012807_040--Hb_000160_020 Hb_012675_040--Hb_167188_020 Hb_012675_040--Hb_012807_040 Hb_012675_040--Hb_001300_190 Hb_001253_050--Hb_002973_100 Hb_001253_050--Hb_008173_160 Hb_001253_050--Hb_088689_010 Hb_001253_050--Hb_000160_020 Hb_007894_200 Hb_007894_200 Hb_001253_050--Hb_007894_200 Hb_000160_020--Hb_002973_100 Hb_000160_020--Hb_008173_160 Hb_000160_020--Hb_088689_010 Hb_000160_020--Hb_007894_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.18861 0.826911 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.17536

CAGE analysis