Hb_004553_050

Information

Type -
Description -
Location Contig4553: 78420-86075
Sequence    

Annotation

kegg
ID pop:POPTR_0004s20840g
description leucine-rich repeat transmembrane protein kinase
nr
ID XP_012066279.1
description PREDICTED: probable inactive receptor kinase At5g10020 [Jatropha curcas]
swissprot
ID Q0WR59
description Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2
trembl
ID B9MYT0
description Leucine-rich repeat transmembrane protein kinase OS=Populus trichocarpa GN=POPTR_0004s20840g PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable inactive receptor kinase at5g10020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43425: 81652-82718 , PASA_asmbl_43426: 83077-85202 , PASA_asmbl_43427: 85292-85558 , PASA_asmbl_43429: 86285-86675
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004553_050 0.0 - - PREDICTED: probable inactive receptor kinase At5g10020 [Jatropha curcas]
2 Hb_001374_050 0.0347123673 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
3 Hb_005460_040 0.0369545251 - - PREDICTED: long chain acyl-CoA synthetase 2 [Jatropha curcas]
4 Hb_001300_190 0.0534654345 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001789_220 0.0708796509 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]
6 Hb_001253_050 0.0714150573 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
7 Hb_001205_140 0.0725084141 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
8 Hb_002042_090 0.0773799836 - - PREDICTED: root phototropism protein 3-like [Jatropha curcas]
9 Hb_000160_020 0.0786141945 - - PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Jatropha curcas]
10 Hb_002973_100 0.0800785812 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Populus euphratica]
11 Hb_001646_030 0.0803304986 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
12 Hb_031862_210 0.0803579398 - - hypothetical protein JCGZ_24955 [Jatropha curcas]
13 Hb_000739_010 0.0805300674 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
14 Hb_012807_040 0.080613493 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
15 Hb_008173_160 0.0811870044 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
16 Hb_088689_010 0.0812222544 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
17 Hb_145502_010 0.0821763226 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82-like [Jatropha curcas]
18 Hb_003750_110 0.0841232325 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
19 Hb_000189_300 0.084538354 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
20 Hb_007894_200 0.0859961275 - - ubiquitin-conjugating enzyme variant, putative [Ricinus communis]

Gene co-expression network

sample Hb_004553_050 Hb_004553_050 Hb_001374_050 Hb_001374_050 Hb_004553_050--Hb_001374_050 Hb_005460_040 Hb_005460_040 Hb_004553_050--Hb_005460_040 Hb_001300_190 Hb_001300_190 Hb_004553_050--Hb_001300_190 Hb_001789_220 Hb_001789_220 Hb_004553_050--Hb_001789_220 Hb_001253_050 Hb_001253_050 Hb_004553_050--Hb_001253_050 Hb_001205_140 Hb_001205_140 Hb_004553_050--Hb_001205_140 Hb_001374_050--Hb_005460_040 Hb_003750_110 Hb_003750_110 Hb_001374_050--Hb_003750_110 Hb_001374_050--Hb_001300_190 Hb_000836_620 Hb_000836_620 Hb_001374_050--Hb_000836_620 Hb_001374_050--Hb_001205_140 Hb_002042_090 Hb_002042_090 Hb_005460_040--Hb_002042_090 Hb_005460_040--Hb_001300_190 Hb_005460_040--Hb_001789_220 Hb_001166_010 Hb_001166_010 Hb_005460_040--Hb_001166_010 Hb_000739_010 Hb_000739_010 Hb_001300_190--Hb_000739_010 Hb_001646_030 Hb_001646_030 Hb_001300_190--Hb_001646_030 Hb_002259_120 Hb_002259_120 Hb_001300_190--Hb_002259_120 Hb_012675_040 Hb_012675_040 Hb_001300_190--Hb_012675_040 Hb_012807_040 Hb_012807_040 Hb_001300_190--Hb_012807_040 Hb_001789_220--Hb_001205_140 Hb_041433_010 Hb_041433_010 Hb_001789_220--Hb_041433_010 Hb_006117_030 Hb_006117_030 Hb_001789_220--Hb_006117_030 Hb_001789_220--Hb_002042_090 Hb_005345_020 Hb_005345_020 Hb_001789_220--Hb_005345_020 Hb_007681_010 Hb_007681_010 Hb_001789_220--Hb_007681_010 Hb_002973_100 Hb_002973_100 Hb_001253_050--Hb_002973_100 Hb_008173_160 Hb_008173_160 Hb_001253_050--Hb_008173_160 Hb_088689_010 Hb_088689_010 Hb_001253_050--Hb_088689_010 Hb_001253_050--Hb_012807_040 Hb_000160_020 Hb_000160_020 Hb_001253_050--Hb_000160_020 Hb_007894_200 Hb_007894_200 Hb_001253_050--Hb_007894_200 Hb_001205_140--Hb_006117_030 Hb_145502_010 Hb_145502_010 Hb_001205_140--Hb_145502_010 Hb_000018_110 Hb_000018_110 Hb_001205_140--Hb_000018_110 Hb_003598_070 Hb_003598_070 Hb_001205_140--Hb_003598_070 Hb_147976_010 Hb_147976_010 Hb_001205_140--Hb_147976_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00621635 3.5817 1.21289 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0667423 2.20292

CAGE analysis