Hb_031377_010

Information

Type transcription factor
Description TF Family: C2C2-YABBY
Location Contig31377: 38877-45530
Sequence    

Annotation

kegg
ID rcu:RCOM_0956520
description Axial regulator YABBY2, putative
nr
ID ABK95415.1
description unknown [Populus trichocarpa]
swissprot
ID Q9XFB0
description Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2 PE=2 SV=1
trembl
ID A9PGB2
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0003700
description axial regulator yabby 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33183: 44387-44711 , PASA_asmbl_33184: 38825-45490 , PASA_asmbl_33185: 38871-45516 , PASA_asmbl_33186: 43070-43248
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031377_010 0.0 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
2 Hb_000144_130 0.0381491025 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001671_070 0.0476495632 - - kinase, putative [Ricinus communis]
4 Hb_000172_660 0.0487597958 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
5 Hb_002044_100 0.0511898177 - - PREDICTED: uncharacterized protein LOC105643555 [Jatropha curcas]
6 Hb_007617_030 0.0542237626 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
7 Hb_000510_250 0.0583032069 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
8 Hb_001166_010 0.058819339 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
9 Hb_011930_190 0.0591569576 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
10 Hb_000130_340 0.0615443188 - - -
11 Hb_032880_010 0.0633371782 - - PREDICTED: beta-glucosidase 24-like [Jatropha curcas]
12 Hb_002929_030 0.0648700542 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
13 Hb_001546_140 0.0686027238 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
14 Hb_001153_170 0.0716358422 - - PREDICTED: protein HOTHEAD [Populus euphratica]
15 Hb_003050_140 0.0718279318 - - PREDICTED: potassium channel KAT1 [Jatropha curcas]
16 Hb_007853_030 0.0718974184 - - structural molecule, putative [Ricinus communis]
17 Hb_006594_030 0.0727941994 - - -
18 Hb_002259_120 0.0728995172 - - tonoplast intrinsic protein, putative [Ricinus communis]
19 Hb_001646_030 0.0749204542 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
20 Hb_009771_010 0.0751172255 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]

Gene co-expression network

sample Hb_031377_010 Hb_031377_010 Hb_000144_130 Hb_000144_130 Hb_031377_010--Hb_000144_130 Hb_001671_070 Hb_001671_070 Hb_031377_010--Hb_001671_070 Hb_000172_660 Hb_000172_660 Hb_031377_010--Hb_000172_660 Hb_002044_100 Hb_002044_100 Hb_031377_010--Hb_002044_100 Hb_007617_030 Hb_007617_030 Hb_031377_010--Hb_007617_030 Hb_000510_250 Hb_000510_250 Hb_031377_010--Hb_000510_250 Hb_000144_130--Hb_002044_100 Hb_000144_130--Hb_000510_250 Hb_000144_130--Hb_001671_070 Hb_001166_010 Hb_001166_010 Hb_000144_130--Hb_001166_010 Hb_000130_340 Hb_000130_340 Hb_000144_130--Hb_000130_340 Hb_000160_260 Hb_000160_260 Hb_001671_070--Hb_000160_260 Hb_000735_190 Hb_000735_190 Hb_001671_070--Hb_000735_190 Hb_032880_010 Hb_032880_010 Hb_001671_070--Hb_032880_010 Hb_001671_070--Hb_000130_340 Hb_004627_050 Hb_004627_050 Hb_000172_660--Hb_004627_050 Hb_002245_050 Hb_002245_050 Hb_000172_660--Hb_002245_050 Hb_007853_030 Hb_007853_030 Hb_000172_660--Hb_007853_030 Hb_002929_030 Hb_002929_030 Hb_000172_660--Hb_002929_030 Hb_000172_660--Hb_032880_010 Hb_002044_100--Hb_000510_250 Hb_002044_100--Hb_001166_010 Hb_011930_190 Hb_011930_190 Hb_002044_100--Hb_011930_190 Hb_007681_010 Hb_007681_010 Hb_002044_100--Hb_007681_010 Hb_001546_140 Hb_001546_140 Hb_007617_030--Hb_001546_140 Hb_009771_010 Hb_009771_010 Hb_007617_030--Hb_009771_010 Hb_001153_170 Hb_001153_170 Hb_007617_030--Hb_001153_170 Hb_000887_030 Hb_000887_030 Hb_007617_030--Hb_000887_030 Hb_031862_210 Hb_031862_210 Hb_007617_030--Hb_031862_210 Hb_089140_130 Hb_089140_130 Hb_007617_030--Hb_089140_130 Hb_002259_120 Hb_002259_120 Hb_000510_250--Hb_002259_120 Hb_000510_250--Hb_001166_010 Hb_012675_040 Hb_012675_040 Hb_000510_250--Hb_012675_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.369472 39.7453 10.6979 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0752199 0 0 18.8348

CAGE analysis