Hb_000160_260

Information

Type -
Description -
Location Contig160: 228586-230986
Sequence    

Annotation

kegg
ID rcu:RCOM_0336770
description nutrient reservoir, putative
nr
ID XP_002532967.1
description nutrient reservoir, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T3Z8
description Nutrient reservoir, putative OS=Ricinus communis GN=RCOM_0336770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 002_I14.ab1: 230442-231095

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_260 0.0 - - nutrient reservoir, putative [Ricinus communis]
2 Hb_000735_190 0.0416570078 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
3 Hb_001671_070 0.0520849733 - - kinase, putative [Ricinus communis]
4 Hb_006586_060 0.0585650757 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
5 Hb_000751_010 0.059877905 - - conserved hypothetical protein [Ricinus communis]
6 Hb_102129_040 0.0608695423 - - PREDICTED: PTI1-like tyrosine-protein kinase 2 isoform X1 [Jatropha curcas]
7 Hb_031862_190 0.0674324911 - - -
8 Hb_003411_070 0.07536426 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]
9 Hb_000167_150 0.0771789338 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
10 Hb_000136_120 0.0773062728 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
11 Hb_005365_040 0.0784133003 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
12 Hb_001221_550 0.0792168382 - - Corticosteroid 11-beta-dehydrogenase, putative [Ricinus communis]
13 Hb_102900_010 0.081390486 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Jatropha curcas]
14 Hb_001329_060 0.0819669657 - - Polygalacturonase precursor, putative [Ricinus communis]
15 Hb_001369_590 0.0824856119 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
16 Hb_000187_100 0.0840061424 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
17 Hb_006594_030 0.0893747066 - - -
18 Hb_000436_110 0.090679865 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
19 Hb_032880_010 0.0945801176 - - PREDICTED: beta-glucosidase 24-like [Jatropha curcas]
20 Hb_001946_070 0.0947805282 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000160_260 Hb_000160_260 Hb_000735_190 Hb_000735_190 Hb_000160_260--Hb_000735_190 Hb_001671_070 Hb_001671_070 Hb_000160_260--Hb_001671_070 Hb_006586_060 Hb_006586_060 Hb_000160_260--Hb_006586_060 Hb_000751_010 Hb_000751_010 Hb_000160_260--Hb_000751_010 Hb_102129_040 Hb_102129_040 Hb_000160_260--Hb_102129_040 Hb_031862_190 Hb_031862_190 Hb_000160_260--Hb_031862_190 Hb_000735_190--Hb_006586_060 Hb_000735_190--Hb_102129_040 Hb_003411_070 Hb_003411_070 Hb_000735_190--Hb_003411_070 Hb_000735_190--Hb_000751_010 Hb_000167_150 Hb_000167_150 Hb_000735_190--Hb_000167_150 Hb_031377_010 Hb_031377_010 Hb_001671_070--Hb_031377_010 Hb_000144_130 Hb_000144_130 Hb_001671_070--Hb_000144_130 Hb_001671_070--Hb_000735_190 Hb_032880_010 Hb_032880_010 Hb_001671_070--Hb_032880_010 Hb_000130_340 Hb_000130_340 Hb_001671_070--Hb_000130_340 Hb_006586_060--Hb_102129_040 Hb_006586_060--Hb_000751_010 Hb_006586_060--Hb_000167_150 Hb_000136_120 Hb_000136_120 Hb_006586_060--Hb_000136_120 Hb_001221_550 Hb_001221_550 Hb_006586_060--Hb_001221_550 Hb_000751_010--Hb_102129_040 Hb_102900_010 Hb_102900_010 Hb_000751_010--Hb_102900_010 Hb_000751_010--Hb_031862_190 Hb_001329_060 Hb_001329_060 Hb_000751_010--Hb_001329_060 Hb_000751_010--Hb_003411_070 Hb_102129_040--Hb_102900_010 Hb_102129_040--Hb_001329_060 Hb_102129_040--Hb_000167_150 Hb_031862_190--Hb_003411_070 Hb_031862_190--Hb_000735_190 Hb_031862_190--Hb_001329_060 Hb_009293_030 Hb_009293_030 Hb_031862_190--Hb_009293_030 Hb_031862_190--Hb_102129_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0485266 4.75067 1.00075 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.32521

CAGE analysis