Hb_001153_170

Information

Type -
Description -
Location Contig1153: 108811-112443
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08620g
description POPTRDRAFT_548528; glucose-methanol-choline oxidoreductase family protein
nr
ID XP_011029158.1
description PREDICTED: protein HOTHEAD [Populus euphratica]
swissprot
ID Q9S746
description Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1
trembl
ID B9GKQ2
description Glucose-methanol-choline oxidoreductase family protein OS=Populus trichocarpa GN=POPTR_0001s08620g PE=3 SV=1
Gene Ontology
ID GO:0016614
description protein hothead

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04618: 108745-112201 , PASA_asmbl_04619: 109603-109847
cDNA
(Sanger)
(ID:Location)		 002_L14.ab1: 108808-109194 , 004_H19.ab1: 110165-112073 , 007_K12.ab1: 110287-112075 , 009_M15.ab1: 108808-109194 , 012_O16.ab1: 110511-112201 , 016_A18.ab1: 110287-112073 , 027_B22.ab1: 110308-112073 , 030_D21.ab1: 110494-112201 , 047_D17.ab1: 109371-110451

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001153_170 0.0 - - PREDICTED: protein HOTHEAD [Populus euphratica]
2 Hb_089140_130 0.0158993421 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
3 Hb_009771_010 0.0186499035 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
4 Hb_011316_080 0.0276117755 - - Cucumisin precursor, putative [Ricinus communis]
5 Hb_001546_140 0.0285489095 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
6 Hb_006594_030 0.0300951407 - - -
7 Hb_007617_030 0.0379413464 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
8 Hb_000136_120 0.0445015568 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
9 Hb_002929_030 0.0461467634 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
10 Hb_000847_040 0.0481029068 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
11 Hb_000167_150 0.0500353718 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
12 Hb_000635_240 0.0506246803 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
13 Hb_000887_030 0.0541699004 - - serine carboxypeptidase, putative [Ricinus communis]
14 Hb_001433_210 0.0631520668 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
15 Hb_000979_210 0.0638010153 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001946_070 0.0645308013 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
17 Hb_000130_340 0.0656475929 - - -
18 Hb_000243_360 0.0671915409 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
19 Hb_025048_050 0.0683324884 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
20 Hb_032880_010 0.0685711543 - - PREDICTED: beta-glucosidase 24-like [Jatropha curcas]

Gene co-expression network

sample Hb_001153_170 Hb_001153_170 Hb_089140_130 Hb_089140_130 Hb_001153_170--Hb_089140_130 Hb_009771_010 Hb_009771_010 Hb_001153_170--Hb_009771_010 Hb_011316_080 Hb_011316_080 Hb_001153_170--Hb_011316_080 Hb_001546_140 Hb_001546_140 Hb_001153_170--Hb_001546_140 Hb_006594_030 Hb_006594_030 Hb_001153_170--Hb_006594_030 Hb_007617_030 Hb_007617_030 Hb_001153_170--Hb_007617_030 Hb_089140_130--Hb_011316_080 Hb_089140_130--Hb_009771_010 Hb_089140_130--Hb_001546_140 Hb_000847_040 Hb_000847_040 Hb_089140_130--Hb_000847_040 Hb_089140_130--Hb_006594_030 Hb_009771_010--Hb_001546_140 Hb_009771_010--Hb_011316_080 Hb_002929_030 Hb_002929_030 Hb_009771_010--Hb_002929_030 Hb_009771_010--Hb_007617_030 Hb_011316_080--Hb_000847_040 Hb_011316_080--Hb_001546_140 Hb_002006_080 Hb_002006_080 Hb_011316_080--Hb_002006_080 Hb_001546_140--Hb_007617_030 Hb_001433_210 Hb_001433_210 Hb_001546_140--Hb_001433_210 Hb_000136_120 Hb_000136_120 Hb_006594_030--Hb_000136_120 Hb_000167_150 Hb_000167_150 Hb_006594_030--Hb_000167_150 Hb_006594_030--Hb_009771_010 Hb_006594_030--Hb_007617_030 Hb_000887_030 Hb_000887_030 Hb_007617_030--Hb_000887_030 Hb_031862_210 Hb_031862_210 Hb_007617_030--Hb_031862_210 Hb_007617_030--Hb_089140_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0258201 0.10364 384.691 73.1923 0 0.00816305
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0153784 0 0 179.129

CAGE analysis