Hb_002307_140

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig2307: 90253-92476
Sequence    

Annotation

kegg
ID pop:POPTR_0008s16110g
description POPTRDRAFT_720961; aux/IAA family protein
nr
ID XP_002311658.1
description aux/IAA family protein [Populus trichocarpa]
swissprot
ID Q38832
description Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2
trembl
ID A9PH58
description Auxin-responsive protein OS=Populus trichocarpa GN=POPTR_0008s16110g PE=2 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24246: 90375-92513
cDNA
(Sanger)
(ID:Location)		 006_O02.ab1: 91201-92476 , 013_A15.ab1: 91208-92476 , 022_G07.ab1: 91928-92471 , 038_M24.ab1: 91193-92474 , 039_F15.ab1: 91158-92476 , 042_C11.ab1: 90863-92498 , 047_D04.ab1: 91165-92476 , 049_J12.ab1: 91777-92471

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002307_140 0.0 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]
2 Hb_007218_050 0.0192591418 - - zinc finger protein, putative [Ricinus communis]
3 Hb_006711_030 0.0315672694 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
4 Hb_180535_010 0.0396375094 - - -
5 Hb_000816_180 0.0440496525 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
6 Hb_007044_240 0.0515706433 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
7 Hb_007576_090 0.0527090798 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
8 Hb_000089_170 0.0564105334 - - PREDICTED: uncharacterized protein LOC105134595 [Populus euphratica]
9 Hb_167188_020 0.0608419465 - - PREDICTED: uncharacterized protein At1g05835 [Jatropha curcas]
10 Hb_061336_010 0.0630768588 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000840_080 0.0655645371 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
12 Hb_000847_090 0.0691271547 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
13 Hb_000556_060 0.0736616496 - - hypothetical protein OsJ_28181 [Oryza sativa Japonica Group]
14 Hb_000127_240 0.0738273021 - - SAUR39 [Populus tomentosa]
15 Hb_000258_400 0.078522551 transcription factor TF Family: bHLH transcription regulator, putative [Ricinus communis]
16 Hb_009847_010 0.0788572785 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
17 Hb_072952_010 0.0794931461 - - PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]
18 Hb_007760_060 0.0832717069 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
19 Hb_002893_220 0.0834978135 - - hypothetical protein B456_001G004300 [Gossypium raimondii]
20 Hb_132840_190 0.0835861167 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002307_140 Hb_002307_140 Hb_007218_050 Hb_007218_050 Hb_002307_140--Hb_007218_050 Hb_006711_030 Hb_006711_030 Hb_002307_140--Hb_006711_030 Hb_180535_010 Hb_180535_010 Hb_002307_140--Hb_180535_010 Hb_000816_180 Hb_000816_180 Hb_002307_140--Hb_000816_180 Hb_007044_240 Hb_007044_240 Hb_002307_140--Hb_007044_240 Hb_007576_090 Hb_007576_090 Hb_002307_140--Hb_007576_090 Hb_007218_050--Hb_180535_010 Hb_007218_050--Hb_000816_180 Hb_007218_050--Hb_006711_030 Hb_007218_050--Hb_007576_090 Hb_061336_010 Hb_061336_010 Hb_007218_050--Hb_061336_010 Hb_167188_020 Hb_167188_020 Hb_006711_030--Hb_167188_020 Hb_000089_170 Hb_000089_170 Hb_006711_030--Hb_000089_170 Hb_006711_030--Hb_007044_240 Hb_000840_080 Hb_000840_080 Hb_006711_030--Hb_000840_080 Hb_180535_010--Hb_000816_180 Hb_180535_010--Hb_007576_090 Hb_180535_010--Hb_061336_010 Hb_072952_010 Hb_072952_010 Hb_180535_010--Hb_072952_010 Hb_000816_180--Hb_061336_010 Hb_000816_180--Hb_007576_090 Hb_000816_180--Hb_072952_010 Hb_000556_060 Hb_000556_060 Hb_007044_240--Hb_000556_060 Hb_007044_240--Hb_007218_050 Hb_009847_010 Hb_009847_010 Hb_007044_240--Hb_009847_010 Hb_007044_240--Hb_180535_010 Hb_007576_090--Hb_061336_010 Hb_007760_060 Hb_007760_060 Hb_007576_090--Hb_007760_060 Hb_007576_090--Hb_072952_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0730336 484.743 269.454 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0386072 0 0 0 163.975

CAGE analysis