Hb_072952_010

Information

Type -
Description -
Location Contig72952: 115-393
Sequence    

Annotation

kegg
ID pop:POPTR_0019s04140g
description POPTRDRAFT_809489; hypothetical protein
nr
ID XP_011002017.1
description PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]
swissprot
ID Q5PNZ0
description GDSL esterase/lipase At5g18430 OS=Arabidopsis thaliana GN=At5g18430 PE=2 SV=1
trembl
ID B9IPF3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s04140g PE=4 SV=2
Gene Ontology
ID GO:0005622
description gdsl esterase lipase at5g33370-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 012_H04.ab1: 160-455

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_072952_010 0.0 - - PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]
2 Hb_061336_010 0.0411854806 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007576_090 0.0439123486 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
4 Hb_000375_100 0.0470865947 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
5 Hb_180535_010 0.0475879967 - - -
6 Hb_000816_180 0.0492699008 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
7 Hb_000258_400 0.0495245903 transcription factor TF Family: bHLH transcription regulator, putative [Ricinus communis]
8 Hb_000010_430 0.0535833221 - - Esterase precursor, putative [Ricinus communis]
9 Hb_007760_060 0.0552205803 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
10 Hb_028486_020 0.0594897494 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007218_050 0.0703617541 - - zinc finger protein, putative [Ricinus communis]
12 Hb_000073_040 0.0722260391 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
13 Hb_000127_240 0.078027094 - - SAUR39 [Populus tomentosa]
14 Hb_002307_140 0.0794931461 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]
15 Hb_000397_060 0.0798884427 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
16 Hb_072620_010 0.0847143253 - - PREDICTED: receptor-like protein kinase 2 [Cucumis melo]
17 Hb_000130_400 0.0880924769 transcription factor TF Family: bZIP hypothetical protein POPTR_0001s38320g [Populus trichocarpa]
18 Hb_008686_040 0.0924224655 - - PREDICTED: uncharacterized protein LOC105632278 isoform X3 [Jatropha curcas]
19 Hb_001958_040 0.0941989983 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
20 Hb_006614_020 0.098197862 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_072952_010 Hb_072952_010 Hb_061336_010 Hb_061336_010 Hb_072952_010--Hb_061336_010 Hb_007576_090 Hb_007576_090 Hb_072952_010--Hb_007576_090 Hb_000375_100 Hb_000375_100 Hb_072952_010--Hb_000375_100 Hb_180535_010 Hb_180535_010 Hb_072952_010--Hb_180535_010 Hb_000816_180 Hb_000816_180 Hb_072952_010--Hb_000816_180 Hb_000258_400 Hb_000258_400 Hb_072952_010--Hb_000258_400 Hb_061336_010--Hb_000816_180 Hb_061336_010--Hb_180535_010 Hb_061336_010--Hb_007576_090 Hb_028486_020 Hb_028486_020 Hb_061336_010--Hb_028486_020 Hb_007218_050 Hb_007218_050 Hb_061336_010--Hb_007218_050 Hb_007576_090--Hb_180535_010 Hb_007576_090--Hb_000816_180 Hb_007760_060 Hb_007760_060 Hb_007576_090--Hb_007760_060 Hb_007576_090--Hb_007218_050 Hb_000010_430 Hb_000010_430 Hb_000375_100--Hb_000010_430 Hb_000375_100--Hb_007760_060 Hb_000375_100--Hb_007576_090 Hb_000375_100--Hb_061336_010 Hb_000375_100--Hb_028486_020 Hb_180535_010--Hb_000816_180 Hb_180535_010--Hb_007218_050 Hb_002307_140 Hb_002307_140 Hb_180535_010--Hb_002307_140 Hb_000816_180--Hb_007218_050 Hb_000816_180--Hb_002307_140 Hb_000258_400--Hb_180535_010 Hb_000258_400--Hb_000816_180 Hb_000073_040 Hb_000073_040 Hb_000258_400--Hb_000073_040 Hb_000258_400--Hb_007576_090 Hb_000258_400--Hb_061336_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 40.478 19.3147 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.166801 8.44481

CAGE analysis