Hb_028486_020

Information

Type -
Description -
Location Contig28486: 12500-13318
Sequence    

Annotation

kegg
ID rcu:RCOM_1281870
description hypothetical protein
nr
ID XP_002523833.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SCW4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1281870 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29779: 12291-13362 , PASA_asmbl_29780: 12275-13610
cDNA
(Sanger)
(ID:Location)		 002_G09.ab1: 12339-13350 , 002_I23.ab1: 12332-13350 , 003_C11.ab1: 12291-13350 , 004_N04.ab1: 12333-13350 , 006_F13.ab1: 12317-13350 , 006_J05.ab1: 12317-13350 , 007_E17.ab1: 12324-13348 , 007_M22.ab1: 12350-13350 , 009_C18.ab1: 12306-13350 , 011_D09.ab1: 12353-13350 , 012_K19.ab1: 12317-13350 , 014_E09.ab1: 12334-13350 , 017_D18.ab1: 12376-13348 , 017_K12.ab1: 12319-13350 , 017_K22.ab1: 12343-13350 , 019_C10.ab1: 12332-13348 , 020_E04.ab1: 12346-13362 , 020_I21.ab1: 12372-13348 , 020_O03.ab1: 12319-13350 , 023_G20.ab1: 12327-13348 , 025_M13.ab1: 12339-13350 , 026_E15.ab1: 12326-13348 , 026_H01.ab1: 12436-13341 , 027_B14.ab1: 12339-13350 , 028_H05.ab1: 12326-13348 , 029_B14.ab1: 12502-13341 , 030_M14.ab1: 12300-13350 , 030_P08.ab1: 12352-13362 , 031_P06.ab1: 12331-13349 , 032_C03.ab1: 12317-13350 , 035_O08.ab1: 12331-13349 , 036_E07.ab1: 12369-13362 , 039_P19.ab1: 12451-13347 , 040_A14.ab1: 12317-13350 , 040_P16.ab1: 12318-13350 , 041_H02.ab1: 12451-13352 , 042_I22.ab1: 12319-13350 , 043_P23.ab1: 12346-13362 , 044_A20.ab1: 12337-13350 , 046_D13.ab1: 12318-13350 , 046_P19.ab1: 12376-13350 , 047_D01.ab1: 12451-13350 , 048_N06.ab1: 12317-13350 , 049_P24.ab1: 12372-13347 , 050_D23.ab1: 12352-13350 , 050_L15.ab1: 12378-13350 , 050_P01.ab1: 12352-13350 , 051_I13.ab1: 12451-13350 , 051_O17.ab1: 12330-13362 , 052_F06.ab1: 12381-13350 , 052_L05.ab1: 12332-13350 , 052_O20.ab1: 12352-13350 , 053_I12.ab1: 12317-13350

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028486_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_061336_010 0.0385135824 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000816_180 0.0542994748 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
4 Hb_000496_100 0.0558342778 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
5 Hb_072952_010 0.0594897494 - - PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]
6 Hb_000375_100 0.0625368257 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
7 Hb_007576_090 0.0630709624 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
8 Hb_000010_430 0.0632674767 - - Esterase precursor, putative [Ricinus communis]
9 Hb_180535_010 0.0665966932 - - -
10 Hb_000130_400 0.0698676738 transcription factor TF Family: bZIP hypothetical protein POPTR_0001s38320g [Populus trichocarpa]
11 Hb_002893_220 0.0808493801 - - hypothetical protein B456_001G004300 [Gossypium raimondii]
12 Hb_010737_030 0.084407876 - - unnamed protein product [Vitis vinifera]
13 Hb_007218_050 0.084909852 - - zinc finger protein, putative [Ricinus communis]
14 Hb_000258_400 0.0875051051 transcription factor TF Family: bHLH transcription regulator, putative [Ricinus communis]
15 Hb_000051_130 0.0883877159 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
16 Hb_059832_010 0.0891978069 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
17 Hb_007760_060 0.0896799594 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
18 Hb_001221_550 0.0904917941 - - Corticosteroid 11-beta-dehydrogenase, putative [Ricinus communis]
19 Hb_000397_060 0.0935495782 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
20 Hb_002307_140 0.0955741136 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_028486_020 Hb_028486_020 Hb_061336_010 Hb_061336_010 Hb_028486_020--Hb_061336_010 Hb_000816_180 Hb_000816_180 Hb_028486_020--Hb_000816_180 Hb_000496_100 Hb_000496_100 Hb_028486_020--Hb_000496_100 Hb_072952_010 Hb_072952_010 Hb_028486_020--Hb_072952_010 Hb_000375_100 Hb_000375_100 Hb_028486_020--Hb_000375_100 Hb_007576_090 Hb_007576_090 Hb_028486_020--Hb_007576_090 Hb_061336_010--Hb_000816_180 Hb_180535_010 Hb_180535_010 Hb_061336_010--Hb_180535_010 Hb_061336_010--Hb_007576_090 Hb_061336_010--Hb_072952_010 Hb_007218_050 Hb_007218_050 Hb_061336_010--Hb_007218_050 Hb_000816_180--Hb_180535_010 Hb_000816_180--Hb_007576_090 Hb_000816_180--Hb_007218_050 Hb_002307_140 Hb_002307_140 Hb_000816_180--Hb_002307_140 Hb_000816_180--Hb_072952_010 Hb_010737_030 Hb_010737_030 Hb_000496_100--Hb_010737_030 Hb_018663_010 Hb_018663_010 Hb_000496_100--Hb_018663_010 Hb_102900_010 Hb_102900_010 Hb_000496_100--Hb_102900_010 Hb_000130_400 Hb_000130_400 Hb_000496_100--Hb_000130_400 Hb_008165_010 Hb_008165_010 Hb_000496_100--Hb_008165_010 Hb_072952_010--Hb_007576_090 Hb_072952_010--Hb_000375_100 Hb_072952_010--Hb_180535_010 Hb_000258_400 Hb_000258_400 Hb_072952_010--Hb_000258_400 Hb_000010_430 Hb_000010_430 Hb_000375_100--Hb_000010_430 Hb_007760_060 Hb_007760_060 Hb_000375_100--Hb_007760_060 Hb_000375_100--Hb_007576_090 Hb_000375_100--Hb_061336_010 Hb_007576_090--Hb_180535_010 Hb_007576_090--Hb_007760_060 Hb_007576_090--Hb_007218_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.528301 1708.48 630.889 0 0.296092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.257429 0 0 0.0419419 342.957

CAGE analysis