Hb_000258_400

Information

Type transcription factor
Description TF Family: bHLH
Location Contig258: 384583-385778
Sequence    

Annotation

kegg
ID rcu:RCOM_0697210
description transcription regulator, putative
nr
ID XP_002520108.1
description transcription regulator, putative [Ricinus communis]
swissprot
ID Q8GW32
description Transcription factor PRE6 OS=Arabidopsis thaliana GN=PRE6 PE=1 SV=1
trembl
ID B9S289
description Transcription regulator, putative OS=Ricinus communis GN=RCOM_0697210 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh135

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26850: 384585-385755
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_400 0.0 transcription factor TF Family: bHLH transcription regulator, putative [Ricinus communis]
2 Hb_072952_010 0.0495245903 - - PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]
3 Hb_180535_010 0.0654905067 - - -
4 Hb_000816_180 0.0661677104 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
5 Hb_000073_040 0.0662456296 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
6 Hb_007576_090 0.0680901418 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
7 Hb_061336_010 0.0686411762 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007218_050 0.0720983372 - - zinc finger protein, putative [Ricinus communis]
9 Hb_002307_140 0.078522551 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]
10 Hb_072620_010 0.0808458927 - - PREDICTED: receptor-like protein kinase 2 [Cucumis melo]
11 Hb_007760_060 0.0849849588 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
12 Hb_008686_040 0.0864020912 - - PREDICTED: uncharacterized protein LOC105632278 isoform X3 [Jatropha curcas]
13 Hb_028486_020 0.0875051051 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000375_100 0.0879842014 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
15 Hb_000397_060 0.0885198697 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
16 Hb_000847_090 0.088710728 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
17 Hb_000127_240 0.0929639015 - - SAUR39 [Populus tomentosa]
18 Hb_000010_430 0.0932340936 - - Esterase precursor, putative [Ricinus communis]
19 Hb_001958_040 0.0934050404 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
20 Hb_006711_030 0.0966607963 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]

Gene co-expression network

sample Hb_000258_400 Hb_000258_400 Hb_072952_010 Hb_072952_010 Hb_000258_400--Hb_072952_010 Hb_180535_010 Hb_180535_010 Hb_000258_400--Hb_180535_010 Hb_000816_180 Hb_000816_180 Hb_000258_400--Hb_000816_180 Hb_000073_040 Hb_000073_040 Hb_000258_400--Hb_000073_040 Hb_007576_090 Hb_007576_090 Hb_000258_400--Hb_007576_090 Hb_061336_010 Hb_061336_010 Hb_000258_400--Hb_061336_010 Hb_072952_010--Hb_061336_010 Hb_072952_010--Hb_007576_090 Hb_000375_100 Hb_000375_100 Hb_072952_010--Hb_000375_100 Hb_072952_010--Hb_180535_010 Hb_072952_010--Hb_000816_180 Hb_180535_010--Hb_000816_180 Hb_180535_010--Hb_007576_090 Hb_180535_010--Hb_061336_010 Hb_007218_050 Hb_007218_050 Hb_180535_010--Hb_007218_050 Hb_002307_140 Hb_002307_140 Hb_180535_010--Hb_002307_140 Hb_000816_180--Hb_061336_010 Hb_000816_180--Hb_007576_090 Hb_000816_180--Hb_007218_050 Hb_000816_180--Hb_002307_140 Hb_001958_040 Hb_001958_040 Hb_000073_040--Hb_001958_040 Hb_000397_060 Hb_000397_060 Hb_000073_040--Hb_000397_060 Hb_000073_040--Hb_072952_010 Hb_072620_010 Hb_072620_010 Hb_000073_040--Hb_072620_010 Hb_002045_160 Hb_002045_160 Hb_000073_040--Hb_002045_160 Hb_007576_090--Hb_061336_010 Hb_007760_060 Hb_007760_060 Hb_007576_090--Hb_007760_060 Hb_007576_090--Hb_007218_050 Hb_028486_020 Hb_028486_020 Hb_061336_010--Hb_028486_020 Hb_061336_010--Hb_007218_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 28.1575 13.9546 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0946771 0 0.324818 7.18541

CAGE analysis