Hb_072620_010

Information

Type -
Description -
Location Contig72620: 57-767
Sequence    

Annotation

kegg
ID cmo:103500020
description receptor-like protein kinase 2
nr
ID XP_008461425.1
description PREDICTED: receptor-like protein kinase 2 [Cucumis melo]
swissprot
ID -
description -
trembl
ID A0A0D3BIA6
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID GO:0016301
description lrr receptor-like serine threonine-protein kinase gso1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_072620_010 0.0 - - PREDICTED: receptor-like protein kinase 2 [Cucumis melo]
2 Hb_000073_040 0.0767020275 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
3 Hb_000258_400 0.0808458927 transcription factor TF Family: bHLH transcription regulator, putative [Ricinus communis]
4 Hb_072952_010 0.0847143253 - - PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]
5 Hb_001257_070 0.0882479298 - - PREDICTED: aspartic proteinase nepenthesin-1-like [Jatropha curcas]
6 Hb_000671_020 0.0884544004 - - PREDICTED: RNA-binding protein 38 [Jatropha curcas]
7 Hb_002045_160 0.092824106 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]
8 Hb_008686_040 0.0995040752 - - PREDICTED: uncharacterized protein LOC105632278 isoform X3 [Jatropha curcas]
9 Hb_001623_250 0.1010985616 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
10 Hb_012395_040 0.1012448694 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000375_100 0.1050587123 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
12 Hb_002053_100 0.1059520577 - - actin binding protein, putative [Ricinus communis]
13 Hb_005288_090 0.1060592328 - - PREDICTED: uncharacterized protein LOC105647753 [Jatropha curcas]
14 Hb_007760_060 0.1063878536 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
15 Hb_034420_010 0.107559926 - - glutathione S-transferase [Caragana korshinskii]
16 Hb_000010_430 0.1079824823 - - Esterase precursor, putative [Ricinus communis]
17 Hb_003006_070 0.1097092718 - - aquaporin [Manihot esculenta]
18 Hb_007576_090 0.111747226 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
19 Hb_001958_040 0.1124289434 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
20 Hb_005116_120 0.1125132141 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_072620_010 Hb_072620_010 Hb_000073_040 Hb_000073_040 Hb_072620_010--Hb_000073_040 Hb_000258_400 Hb_000258_400 Hb_072620_010--Hb_000258_400 Hb_072952_010 Hb_072952_010 Hb_072620_010--Hb_072952_010 Hb_001257_070 Hb_001257_070 Hb_072620_010--Hb_001257_070 Hb_000671_020 Hb_000671_020 Hb_072620_010--Hb_000671_020 Hb_002045_160 Hb_002045_160 Hb_072620_010--Hb_002045_160 Hb_001958_040 Hb_001958_040 Hb_000073_040--Hb_001958_040 Hb_000397_060 Hb_000397_060 Hb_000073_040--Hb_000397_060 Hb_000073_040--Hb_000258_400 Hb_000073_040--Hb_072952_010 Hb_000073_040--Hb_002045_160 Hb_000258_400--Hb_072952_010 Hb_180535_010 Hb_180535_010 Hb_000258_400--Hb_180535_010 Hb_000816_180 Hb_000816_180 Hb_000258_400--Hb_000816_180 Hb_007576_090 Hb_007576_090 Hb_000258_400--Hb_007576_090 Hb_061336_010 Hb_061336_010 Hb_000258_400--Hb_061336_010 Hb_072952_010--Hb_061336_010 Hb_072952_010--Hb_007576_090 Hb_000375_100 Hb_000375_100 Hb_072952_010--Hb_000375_100 Hb_072952_010--Hb_180535_010 Hb_072952_010--Hb_000816_180 Hb_012395_040 Hb_012395_040 Hb_001257_070--Hb_012395_040 Hb_034420_010 Hb_034420_010 Hb_001257_070--Hb_034420_010 Hb_005288_090 Hb_005288_090 Hb_001257_070--Hb_005288_090 Hb_008226_050 Hb_008226_050 Hb_001257_070--Hb_008226_050 Hb_005618_070 Hb_005618_070 Hb_001257_070--Hb_005618_070 Hb_000261_550 Hb_000261_550 Hb_000671_020--Hb_000261_550 Hb_000671_020--Hb_012395_040 Hb_000116_050 Hb_000116_050 Hb_000671_020--Hb_000116_050 Hb_000671_020--Hb_034420_010 Hb_009113_060 Hb_009113_060 Hb_000671_020--Hb_009113_060 Hb_001053_170 Hb_001053_170 Hb_002045_160--Hb_001053_170 Hb_002045_160--Hb_000397_060 Hb_002045_160--Hb_001958_040 Hb_000010_320 Hb_000010_320 Hb_002045_160--Hb_000010_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.671925 0.353409 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.025308 0.123337

CAGE analysis