Hb_001053_170

Information

Type -
Description -
Location Contig1053: 128779-131291
Sequence    

Annotation

kegg
ID rcu:RCOM_0403790
description hypothetical protein
nr
ID XP_012065557.1
description PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L4W4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16754 PE=4 SV=1
Gene Ontology
ID GO:0044763
description polyribonucleotide nucleotidyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001053_170 0.0 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
2 Hb_002045_160 0.0838253998 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]
3 Hb_001511_210 0.0960418852 - - PREDICTED: protein ESKIMO 1-like [Jatropha curcas]
4 Hb_002301_120 0.1056894947 - - PREDICTED: uncharacterized protein LOC105649581 [Jatropha curcas]
5 Hb_011671_050 0.1093221834 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
6 Hb_005116_120 0.1096319069 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
7 Hb_001439_050 0.1098603051 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
8 Hb_000964_050 0.1140910532 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
9 Hb_000073_040 0.1144227885 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
10 Hb_001258_130 0.1157056187 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
11 Hb_005305_160 0.1163808496 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002374_470 0.1173727734 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
13 Hb_003777_260 0.1181752779 - - PREDICTED: uncharacterized protein LOC105640927 isoform X4 [Jatropha curcas]
14 Hb_000830_010 0.1199695634 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005276_190 0.1205922765 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
16 Hb_000297_210 0.1211177505 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
17 Hb_003894_170 0.1212094487 transcription factor TF Family: LOB hypothetical protein CICLE_v10021992mg [Citrus clementina]
18 Hb_001623_250 0.1220104052 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
19 Hb_072620_010 0.1223069002 - - PREDICTED: receptor-like protein kinase 2 [Cucumis melo]
20 Hb_001357_160 0.1230524131 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001053_170 Hb_001053_170 Hb_002045_160 Hb_002045_160 Hb_001053_170--Hb_002045_160 Hb_001511_210 Hb_001511_210 Hb_001053_170--Hb_001511_210 Hb_002301_120 Hb_002301_120 Hb_001053_170--Hb_002301_120 Hb_011671_050 Hb_011671_050 Hb_001053_170--Hb_011671_050 Hb_005116_120 Hb_005116_120 Hb_001053_170--Hb_005116_120 Hb_001439_050 Hb_001439_050 Hb_001053_170--Hb_001439_050 Hb_000073_040 Hb_000073_040 Hb_002045_160--Hb_000073_040 Hb_000397_060 Hb_000397_060 Hb_002045_160--Hb_000397_060 Hb_001958_040 Hb_001958_040 Hb_002045_160--Hb_001958_040 Hb_072620_010 Hb_072620_010 Hb_002045_160--Hb_072620_010 Hb_000010_320 Hb_000010_320 Hb_002045_160--Hb_000010_320 Hb_001258_130 Hb_001258_130 Hb_001511_210--Hb_001258_130 Hb_001511_210--Hb_002301_120 Hb_002066_100 Hb_002066_100 Hb_001511_210--Hb_002066_100 Hb_016297_010 Hb_016297_010 Hb_001511_210--Hb_016297_010 Hb_000722_030 Hb_000722_030 Hb_001511_210--Hb_000722_030 Hb_002374_470 Hb_002374_470 Hb_001511_210--Hb_002374_470 Hb_002301_120--Hb_001258_130 Hb_003894_170 Hb_003894_170 Hb_002301_120--Hb_003894_170 Hb_002301_120--Hb_001439_050 Hb_002301_120--Hb_000073_040 Hb_000120_340 Hb_000120_340 Hb_011671_050--Hb_000120_340 Hb_002518_040 Hb_002518_040 Hb_011671_050--Hb_002518_040 Hb_011671_050--Hb_001439_050 Hb_011671_050--Hb_001511_210 Hb_003666_070 Hb_003666_070 Hb_011671_050--Hb_003666_070 Hb_007632_160 Hb_007632_160 Hb_011671_050--Hb_007632_160 Hb_003777_260 Hb_003777_260 Hb_005116_120--Hb_003777_260 Hb_181744_010 Hb_181744_010 Hb_005116_120--Hb_181744_010 Hb_000340_550 Hb_000340_550 Hb_005116_120--Hb_000340_550 Hb_005288_090 Hb_005288_090 Hb_005116_120--Hb_005288_090 Hb_001998_180 Hb_001998_180 Hb_005116_120--Hb_001998_180 Hb_001279_110 Hb_001279_110 Hb_005116_120--Hb_001279_110 Hb_003101_020 Hb_003101_020 Hb_001439_050--Hb_003101_020 Hb_062807_010 Hb_062807_010 Hb_001439_050--Hb_062807_010 Hb_108576_020 Hb_108576_020 Hb_001439_050--Hb_108576_020 Hb_001439_050--Hb_002518_040 Hb_007313_030 Hb_007313_030 Hb_001439_050--Hb_007313_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.109279 0.188921 12.2609 6.38144 0 0.0602467
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0454665 0 0.066185 0.846816 3.38545

CAGE analysis