Hb_003894_170

Information

Type transcription factor
Description TF Family: LOB
Location Contig3894: 110876-113467
Sequence    

Annotation

kegg
ID cic:CICLE_v10021992mg
description hypothetical protein
nr
ID XP_006445237.1
description hypothetical protein CICLE_v10021992mg [Citrus clementina]
swissprot
ID O22131
description LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=2 SV=2
trembl
ID A0A067HD70
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036534mg PE=4 SV=1
Gene Ontology
ID GO:0005634
description lob domain-containing protein 18-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003894_170 0.0 transcription factor TF Family: LOB hypothetical protein CICLE_v10021992mg [Citrus clementina]
2 Hb_002301_120 0.094711487 - - PREDICTED: uncharacterized protein LOC105649581 [Jatropha curcas]
3 Hb_000109_140 0.0963943491 - - hypothetical protein CICLE_v100314482mg, partial [Citrus clementina]
4 Hb_000189_180 0.1034754211 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
5 Hb_001079_060 0.1124826074 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
6 Hb_004037_040 0.1130242115 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
7 Hb_004076_060 0.1148769073 - - PREDICTED: UDP-glycosyltransferase 82A1 [Jatropha curcas]
8 Hb_005731_010 0.1152389338 - - hypothetical protein VITISV_030941 [Vitis vinifera]
9 Hb_000847_090 0.1172567312 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
10 Hb_001053_170 0.1212094487 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
11 Hb_001514_030 0.1212745436 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
12 Hb_001958_010 0.1224618008 - - hypothetical protein CICLE_v100078532mg, partial [Citrus clementina]
13 Hb_007922_030 0.124541364 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
14 Hb_019516_010 0.1265459156 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
15 Hb_008021_060 0.1268973466 - - Squalene monooxygenase, putative [Ricinus communis]
16 Hb_001511_210 0.1271365841 - - PREDICTED: protein ESKIMO 1-like [Jatropha curcas]
17 Hb_000297_210 0.1274702731 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
18 Hb_007520_050 0.1279129742 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
19 Hb_072620_010 0.1281964163 - - PREDICTED: receptor-like protein kinase 2 [Cucumis melo]
20 Hb_009486_050 0.1292948954 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]

Gene co-expression network

sample Hb_003894_170 Hb_003894_170 Hb_002301_120 Hb_002301_120 Hb_003894_170--Hb_002301_120 Hb_000109_140 Hb_000109_140 Hb_003894_170--Hb_000109_140 Hb_000189_180 Hb_000189_180 Hb_003894_170--Hb_000189_180 Hb_001079_060 Hb_001079_060 Hb_003894_170--Hb_001079_060 Hb_004037_040 Hb_004037_040 Hb_003894_170--Hb_004037_040 Hb_004076_060 Hb_004076_060 Hb_003894_170--Hb_004076_060 Hb_001511_210 Hb_001511_210 Hb_002301_120--Hb_001511_210 Hb_001258_130 Hb_001258_130 Hb_002301_120--Hb_001258_130 Hb_001439_050 Hb_001439_050 Hb_002301_120--Hb_001439_050 Hb_001053_170 Hb_001053_170 Hb_002301_120--Hb_001053_170 Hb_000073_040 Hb_000073_040 Hb_002301_120--Hb_000073_040 Hb_000109_140--Hb_000189_180 Hb_005731_010 Hb_005731_010 Hb_000109_140--Hb_005731_010 Hb_001958_010 Hb_001958_010 Hb_000109_140--Hb_001958_010 Hb_000109_140--Hb_004076_060 Hb_012655_010 Hb_012655_010 Hb_000109_140--Hb_012655_010 Hb_000189_180--Hb_001958_010 Hb_000189_180--Hb_004076_060 Hb_000189_180--Hb_005731_010 Hb_000189_180--Hb_004037_040 Hb_032572_010 Hb_032572_010 Hb_000189_180--Hb_032572_010 Hb_001516_010 Hb_001516_010 Hb_001079_060--Hb_001516_010 Hb_002609_120 Hb_002609_120 Hb_001079_060--Hb_002609_120 Hb_001514_030 Hb_001514_030 Hb_001079_060--Hb_001514_030 Hb_001079_060--Hb_004037_040 Hb_009486_050 Hb_009486_050 Hb_001079_060--Hb_009486_050 Hb_002835_310 Hb_002835_310 Hb_001079_060--Hb_002835_310 Hb_004037_040--Hb_001514_030 Hb_004037_040--Hb_001958_010 Hb_016333_010 Hb_016333_010 Hb_004037_040--Hb_016333_010 Hb_168918_010 Hb_168918_010 Hb_004037_040--Hb_168918_010 Hb_004076_060--Hb_005731_010 Hb_004076_060--Hb_001958_010 Hb_004076_060--Hb_012655_010 Hb_000941_110 Hb_000941_110 Hb_004076_060--Hb_000941_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.26503 0.168282 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0228374 0.112555

CAGE analysis