Hb_032572_010

Information

Type -
Description -
Location Contig32572: 25827-27377
Sequence    

Annotation

kegg
ID rcu:RCOM_0893800
description Phospholipase A21 (EC:3.1.1.4)
nr
ID XP_012084568.1
description PREDICTED: phospholipase A2-alpha [Jatropha curcas]
swissprot
ID Q8S8N6
description Phospholipase A2-alpha OS=Arabidopsis thaliana GN=PLA2-ALPHA PE=1 SV=1
trembl
ID A0A067K6H4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20247 PE=4 SV=1
Gene Ontology
ID GO:0004623
description phospholipase a2-alpha-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34294: 25760-27306
cDNA
(Sanger)
(ID:Location)		 010_A13.ab1: 25801-27304 , 049_P19.ab1: 25916-27303

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032572_010 0.0 - - PREDICTED: phospholipase A2-alpha [Jatropha curcas]
2 Hb_001958_010 0.0809991662 - - hypothetical protein CICLE_v100078532mg, partial [Citrus clementina]
3 Hb_027506_030 0.0813345198 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
4 Hb_009767_060 0.0823210674 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
5 Hb_085962_010 0.0911156274 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
6 Hb_000189_180 0.0939884428 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
7 Hb_000303_060 0.0946879169 - - o-methyltransferase, putative [Ricinus communis]
8 Hb_010264_020 0.0972560344 - - unnamed protein product [Vitis vinifera]
9 Hb_001396_030 0.0981041086 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
10 Hb_127839_010 0.1025299388 - - hypothetical protein PRUPE_ppa000956mg [Prunus persica]
11 Hb_111985_100 0.1050531525 - - beta-galactosidase, putative [Ricinus communis]
12 Hb_004037_040 0.1082405437 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
13 Hb_000635_100 0.111213048 - - -
14 Hb_007632_070 0.1117592171 - - kinase, putative [Ricinus communis]
15 Hb_004076_060 0.1137832763 - - PREDICTED: UDP-glycosyltransferase 82A1 [Jatropha curcas]
16 Hb_005181_170 0.1150715977 - - PREDICTED: aldehyde dehydrogenase 22A1 [Jatropha curcas]
17 Hb_000941_110 0.1150908307 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
18 Hb_001514_030 0.1153117529 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
19 Hb_007218_040 0.1185104565 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
20 Hb_001287_090 0.1190547519 - - Endoglucanase 4 [Aegilops tauschii]

Gene co-expression network

sample Hb_032572_010 Hb_032572_010 Hb_001958_010 Hb_001958_010 Hb_032572_010--Hb_001958_010 Hb_027506_030 Hb_027506_030 Hb_032572_010--Hb_027506_030 Hb_009767_060 Hb_009767_060 Hb_032572_010--Hb_009767_060 Hb_085962_010 Hb_085962_010 Hb_032572_010--Hb_085962_010 Hb_000189_180 Hb_000189_180 Hb_032572_010--Hb_000189_180 Hb_000303_060 Hb_000303_060 Hb_032572_010--Hb_000303_060 Hb_001958_010--Hb_000189_180 Hb_004076_060 Hb_004076_060 Hb_001958_010--Hb_004076_060 Hb_005731_010 Hb_005731_010 Hb_001958_010--Hb_005731_010 Hb_000109_140 Hb_000109_140 Hb_001958_010--Hb_000109_140 Hb_000941_110 Hb_000941_110 Hb_001958_010--Hb_000941_110 Hb_027506_030--Hb_085962_010 Hb_004804_010 Hb_004804_010 Hb_027506_030--Hb_004804_010 Hb_001396_030 Hb_001396_030 Hb_027506_030--Hb_001396_030 Hb_010264_020 Hb_010264_020 Hb_027506_030--Hb_010264_020 Hb_027506_030--Hb_000303_060 Hb_009767_060--Hb_000303_060 Hb_002045_010 Hb_002045_010 Hb_009767_060--Hb_002045_010 Hb_004122_010 Hb_004122_010 Hb_009767_060--Hb_004122_010 Hb_009767_060--Hb_001396_030 Hb_001287_090 Hb_001287_090 Hb_009767_060--Hb_001287_090 Hb_085962_010--Hb_001396_030 Hb_085962_010--Hb_000303_060 Hb_085962_010--Hb_004804_010 Hb_085962_010--Hb_010264_020 Hb_002272_120 Hb_002272_120 Hb_085962_010--Hb_002272_120 Hb_000189_180--Hb_004076_060 Hb_000189_180--Hb_000109_140 Hb_000189_180--Hb_005731_010 Hb_004037_040 Hb_004037_040 Hb_000189_180--Hb_004037_040 Hb_000303_060--Hb_001396_030 Hb_000303_060--Hb_010264_020 Hb_000303_060--Hb_004804_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0590456 0.630114 32.2014 46.003 0.0296496 0.0358514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 10.3154 26.1512

CAGE analysis