Hb_001287_090

Information

Type -
Description -
Location Contig1287: 153744-156748
Sequence    

Annotation

kegg
ID pop:POPTR_0004s16900g
description POPTRDRAFT_759738; hypothetical protein
nr
ID EMT30810.1
description Endoglucanase 4 [Aegilops tauschii]
swissprot
ID Q93YQ7
description Endoglucanase 24 OS=Arabidopsis thaliana GN=At4g39010 PE=2 SV=1
trembl
ID M8C0N3
description Endoglucanase OS=Aegilops tauschii GN=F775_32618 PE=3 SV=1
Gene Ontology
ID GO:0008810
description endoglucanase 24-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08757: 153740-156387 , PASA_asmbl_08758: 156497-156757
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001287_090 0.0 - - Endoglucanase 4 [Aegilops tauschii]
2 Hb_009767_060 0.1013984571 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
3 Hb_001396_030 0.1031253651 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
4 Hb_001541_130 0.1073428855 - - GDSL esterase/lipase [Morus notabilis]
5 Hb_168918_010 0.1114994404 - - pectin acetylesterase, putative [Ricinus communis]
6 Hb_085962_010 0.1124083563 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
7 Hb_007811_020 0.1133136307 - - PREDICTED: expansin-A6 [Jatropha curcas]
8 Hb_000303_060 0.114301567 - - o-methyltransferase, putative [Ricinus communis]
9 Hb_011918_070 0.1146692864 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
10 Hb_004037_040 0.1149619294 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
11 Hb_002272_120 0.1150775409 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
12 Hb_003097_130 0.1158359811 - - conserved hypothetical protein [Ricinus communis]
13 Hb_027506_030 0.1167153241 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
14 Hb_007218_040 0.1175966429 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
15 Hb_000112_080 0.1182506916 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
16 Hb_000996_030 0.1186578836 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 isoform X1 [Jatropha curcas]
17 Hb_032572_010 0.1190547519 - - PREDICTED: phospholipase A2-alpha [Jatropha curcas]
18 Hb_001544_090 0.1207569673 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
19 Hb_012518_080 0.1208924217 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
20 Hb_005675_050 0.1210775213 - - alpha-glucosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001287_090 Hb_001287_090 Hb_009767_060 Hb_009767_060 Hb_001287_090--Hb_009767_060 Hb_001396_030 Hb_001396_030 Hb_001287_090--Hb_001396_030 Hb_001541_130 Hb_001541_130 Hb_001287_090--Hb_001541_130 Hb_168918_010 Hb_168918_010 Hb_001287_090--Hb_168918_010 Hb_085962_010 Hb_085962_010 Hb_001287_090--Hb_085962_010 Hb_007811_020 Hb_007811_020 Hb_001287_090--Hb_007811_020 Hb_032572_010 Hb_032572_010 Hb_009767_060--Hb_032572_010 Hb_000303_060 Hb_000303_060 Hb_009767_060--Hb_000303_060 Hb_002045_010 Hb_002045_010 Hb_009767_060--Hb_002045_010 Hb_004122_010 Hb_004122_010 Hb_009767_060--Hb_004122_010 Hb_009767_060--Hb_001396_030 Hb_001396_030--Hb_085962_010 Hb_027506_030 Hb_027506_030 Hb_001396_030--Hb_027506_030 Hb_000112_080 Hb_000112_080 Hb_001396_030--Hb_000112_080 Hb_007218_040 Hb_007218_040 Hb_001396_030--Hb_007218_040 Hb_001396_030--Hb_000303_060 Hb_005542_120 Hb_005542_120 Hb_001396_030--Hb_005542_120 Hb_001095_020 Hb_001095_020 Hb_001541_130--Hb_001095_020 Hb_002572_040 Hb_002572_040 Hb_001541_130--Hb_002572_040 Hb_111985_100 Hb_111985_100 Hb_001541_130--Hb_111985_100 Hb_002150_090 Hb_002150_090 Hb_001541_130--Hb_002150_090 Hb_001541_130--Hb_007811_020 Hb_004435_020 Hb_004435_020 Hb_001541_130--Hb_004435_020 Hb_001514_030 Hb_001514_030 Hb_168918_010--Hb_001514_030 Hb_168918_010--Hb_007218_040 Hb_003666_070 Hb_003666_070 Hb_168918_010--Hb_003666_070 Hb_168918_010--Hb_004122_010 Hb_005976_110 Hb_005976_110 Hb_168918_010--Hb_005976_110 Hb_004037_040 Hb_004037_040 Hb_168918_010--Hb_004037_040 Hb_085962_010--Hb_027506_030 Hb_085962_010--Hb_000303_060 Hb_004804_010 Hb_004804_010 Hb_085962_010--Hb_004804_010 Hb_010264_020 Hb_010264_020 Hb_085962_010--Hb_010264_020 Hb_002272_120 Hb_002272_120 Hb_085962_010--Hb_002272_120 Hb_007811_020--Hb_004435_020 Hb_001544_090 Hb_001544_090 Hb_007811_020--Hb_001544_090 Hb_007811_020--Hb_007218_040 Hb_000878_050 Hb_000878_050 Hb_007811_020--Hb_000878_050 Hb_000392_110 Hb_000392_110 Hb_007811_020--Hb_000392_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.429713 6.41404 8.88259 0.178825 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0623359 0.174117 1.37291 4.64934

CAGE analysis