Hb_000392_110

Information

Type transcription factor
Description TF Family: MYB
Location Contig392: 87323-88844
Sequence    

Annotation

kegg
ID rcu:RCOM_1472910
description r2r3-myb transcription factor, putative
nr
ID XP_002514763.1
description r2r3-myb transcription factor, putative [Ricinus communis]
swissprot
ID P81392
description Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1
trembl
ID B9RLZ4
description R2r3-myb transcription factor, putative (Fragment) OS=Ricinus communis GN=RCOM_1472910 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein 306-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39244: 87222-88852
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_110 0.0 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
2 Hb_004202_020 0.0659902638 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000483_450 0.0698681135 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
4 Hb_000878_050 0.0725331937 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
5 Hb_001117_050 0.0727273546 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
6 Hb_003894_110 0.0774996251 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
7 Hb_001047_090 0.0804099499 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP16-like [Jatropha curcas]
8 Hb_008054_030 0.0812133948 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
9 Hb_000028_190 0.0815062242 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
10 Hb_005542_120 0.0815553709 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
11 Hb_001544_090 0.0830839168 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
12 Hb_000103_450 0.0832921072 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
13 Hb_004435_020 0.0840590512 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
14 Hb_002150_090 0.0844348829 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
15 Hb_004137_040 0.0848355963 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
16 Hb_001674_010 0.0852756193 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
17 Hb_010962_020 0.0855885086 transcription factor TF Family: OFP hypothetical protein RCOM_0815310 [Ricinus communis]
18 Hb_098315_060 0.0864025863 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
19 Hb_010407_130 0.087277741 - - hypothetical protein POPTR_0008s16680g [Populus trichocarpa]
20 Hb_004223_060 0.0875541169 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]

Gene co-expression network

sample Hb_000392_110 Hb_000392_110 Hb_004202_020 Hb_004202_020 Hb_000392_110--Hb_004202_020 Hb_000483_450 Hb_000483_450 Hb_000392_110--Hb_000483_450 Hb_000878_050 Hb_000878_050 Hb_000392_110--Hb_000878_050 Hb_001117_050 Hb_001117_050 Hb_000392_110--Hb_001117_050 Hb_003894_110 Hb_003894_110 Hb_000392_110--Hb_003894_110 Hb_001047_090 Hb_001047_090 Hb_000392_110--Hb_001047_090 Hb_004202_020--Hb_000483_450 Hb_004202_020--Hb_001047_090 Hb_040852_010 Hb_040852_010 Hb_004202_020--Hb_040852_010 Hb_004202_020--Hb_003894_110 Hb_003376_020 Hb_003376_020 Hb_004202_020--Hb_003376_020 Hb_004137_040 Hb_004137_040 Hb_000483_450--Hb_004137_040 Hb_000028_190 Hb_000028_190 Hb_000483_450--Hb_000028_190 Hb_002221_060 Hb_002221_060 Hb_000483_450--Hb_002221_060 Hb_000483_450--Hb_003894_110 Hb_004435_020 Hb_004435_020 Hb_000878_050--Hb_004435_020 Hb_005542_120 Hb_005542_120 Hb_000878_050--Hb_005542_120 Hb_000003_280 Hb_000003_280 Hb_000878_050--Hb_000003_280 Hb_004223_060 Hb_004223_060 Hb_000878_050--Hb_004223_060 Hb_007904_280 Hb_007904_280 Hb_000878_050--Hb_007904_280 Hb_001117_050--Hb_005542_120 Hb_001794_040 Hb_001794_040 Hb_001117_050--Hb_001794_040 Hb_008054_030 Hb_008054_030 Hb_001117_050--Hb_008054_030 Hb_008221_200 Hb_008221_200 Hb_001117_050--Hb_008221_200 Hb_010164_030 Hb_010164_030 Hb_001117_050--Hb_010164_030 Hb_003894_110--Hb_040852_010 Hb_152910_050 Hb_152910_050 Hb_003894_110--Hb_152910_050 Hb_098315_060 Hb_098315_060 Hb_003894_110--Hb_098315_060 Hb_000134_130 Hb_000134_130 Hb_003894_110--Hb_000134_130 Hb_003894_110--Hb_003376_020 Hb_010962_020 Hb_010962_020 Hb_001047_090--Hb_010962_020 Hb_002902_060 Hb_002902_060 Hb_001047_090--Hb_002902_060 Hb_006846_040 Hb_006846_040 Hb_001047_090--Hb_006846_040 Hb_000103_450 Hb_000103_450 Hb_001047_090--Hb_000103_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.29164 10.1371 16.4171 0 0.0185893
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0636998 0 0.650674 7.84462

CAGE analysis