Hb_001047_090

Information

Type transcription factor
Description TF Family: OFP
Location Contig1047: 41256-41930
Sequence    

Annotation

kegg
ID rcu:RCOM_0557250
description hypothetical protein
nr
ID XP_012092217.1
description PREDICTED: transcription repressor OFP16-like [Jatropha curcas]
swissprot
ID Q9SKY9
description Transcription repressor OFP16 OS=Arabidopsis thaliana GN=OFP16 PE=2 SV=1
trembl
ID A0A067JCA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21913 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01610: 41511-42073
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001047_090 0.0 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP16-like [Jatropha curcas]
2 Hb_010962_020 0.0479233616 transcription factor TF Family: OFP hypothetical protein RCOM_0815310 [Ricinus communis]
3 Hb_004202_020 0.0608111428 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002902_060 0.0669786217 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
5 Hb_006846_040 0.071540771 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
6 Hb_000103_450 0.0767972094 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
7 Hb_000392_110 0.0804099499 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
8 Hb_053264_010 0.082014417 - - beta glucosidase [Hevea brasiliensis]
9 Hb_000140_320 0.0852833888 - - delta-8 sphingolipid desaturase [Vernicia fordii]
10 Hb_000483_450 0.0876734679 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
11 Hb_003894_110 0.0912727066 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
12 Hb_010407_130 0.092985999 - - hypothetical protein POPTR_0008s16680g [Populus trichocarpa]
13 Hb_001140_300 0.0940798194 - - PREDICTED: tubulin beta-1 chain [Cicer arietinum]
14 Hb_001136_160 0.0942558449 - - catalytic, putative [Ricinus communis]
15 Hb_010883_170 0.0953299403 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
16 Hb_001056_040 0.0989711158 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
17 Hb_012653_050 0.0991121521 - - hypothetical protein RCOM_0460020 [Ricinus communis]
18 Hb_000003_280 0.0994067205 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007218_040 0.0995573181 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
20 Hb_004435_020 0.1003068493 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]

Gene co-expression network

sample Hb_001047_090 Hb_001047_090 Hb_010962_020 Hb_010962_020 Hb_001047_090--Hb_010962_020 Hb_004202_020 Hb_004202_020 Hb_001047_090--Hb_004202_020 Hb_002902_060 Hb_002902_060 Hb_001047_090--Hb_002902_060 Hb_006846_040 Hb_006846_040 Hb_001047_090--Hb_006846_040 Hb_000103_450 Hb_000103_450 Hb_001047_090--Hb_000103_450 Hb_000392_110 Hb_000392_110 Hb_001047_090--Hb_000392_110 Hb_010962_020--Hb_002902_060 Hb_001898_040 Hb_001898_040 Hb_010962_020--Hb_001898_040 Hb_001136_160 Hb_001136_160 Hb_010962_020--Hb_001136_160 Hb_010962_020--Hb_006846_040 Hb_000003_280 Hb_000003_280 Hb_010962_020--Hb_000003_280 Hb_000483_450 Hb_000483_450 Hb_004202_020--Hb_000483_450 Hb_040852_010 Hb_040852_010 Hb_004202_020--Hb_040852_010 Hb_003894_110 Hb_003894_110 Hb_004202_020--Hb_003894_110 Hb_004202_020--Hb_000392_110 Hb_003376_020 Hb_003376_020 Hb_004202_020--Hb_003376_020 Hb_001709_120 Hb_001709_120 Hb_002902_060--Hb_001709_120 Hb_015292_020 Hb_015292_020 Hb_002902_060--Hb_015292_020 Hb_007122_020 Hb_007122_020 Hb_002902_060--Hb_007122_020 Hb_001975_110 Hb_001975_110 Hb_002902_060--Hb_001975_110 Hb_053264_010 Hb_053264_010 Hb_006846_040--Hb_053264_010 Hb_006846_040--Hb_000103_450 Hb_138585_010 Hb_138585_010 Hb_006846_040--Hb_138585_010 Hb_000903_040 Hb_000903_040 Hb_006846_040--Hb_000903_040 Hb_010407_130 Hb_010407_130 Hb_000103_450--Hb_010407_130 Hb_000103_450--Hb_053264_010 Hb_004435_020 Hb_004435_020 Hb_000103_450--Hb_004435_020 Hb_012653_050 Hb_012653_050 Hb_000103_450--Hb_012653_050 Hb_000392_110--Hb_000483_450 Hb_000878_050 Hb_000878_050 Hb_000392_110--Hb_000878_050 Hb_001117_050 Hb_001117_050 Hb_000392_110--Hb_001117_050 Hb_000392_110--Hb_003894_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.074893 1.13076 2.25762 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.081825 0.790504

CAGE analysis