Hb_001136_160

Information

Type -
Description -
Location Contig1136: 172513-173538
Sequence    

Annotation

kegg
ID rcu:RCOM_0353470
description catalytic, putative
nr
ID XP_002529140.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q9SX25
description Probable carboxylesterase 6 OS=Arabidopsis thaliana GN=CXE6 PE=2 SV=1
trembl
ID B9ST21
description Catalytic, putative OS=Ricinus communis GN=RCOM_0353470 PE=4 SV=1
Gene Ontology
ID GO:0052689
description probable carboxylesterase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04079: 173430-173734
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001136_160 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_001898_040 0.0411894809 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
3 Hb_001136_040 0.0608499978 - - amino acid transporter, putative [Ricinus communis]
4 Hb_009783_010 0.0723240347 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
5 Hb_007122_020 0.0723417619 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
6 Hb_010962_020 0.0747118066 transcription factor TF Family: OFP hypothetical protein RCOM_0815310 [Ricinus communis]
7 Hb_012132_050 0.0770914229 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
8 Hb_011853_020 0.0783985469 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
9 Hb_000003_370 0.0813594941 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
10 Hb_007904_280 0.0815556134 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
11 Hb_007185_050 0.0884352469 - - hypothetical protein JCGZ_22475 [Jatropha curcas]
12 Hb_002636_120 0.089148788 - - Protein bem46, putative [Ricinus communis]
13 Hb_002902_060 0.0898776702 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
14 Hb_011618_110 0.089911627 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
15 Hb_000392_110 0.0910870566 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
16 Hb_050898_030 0.0925900492 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000003_280 0.0926507441 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001047_090 0.0942558449 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP16-like [Jatropha curcas]
19 Hb_004202_020 0.0950638424 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000964_040 0.0953742334 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001136_160 Hb_001136_160 Hb_001898_040 Hb_001898_040 Hb_001136_160--Hb_001898_040 Hb_001136_040 Hb_001136_040 Hb_001136_160--Hb_001136_040 Hb_009783_010 Hb_009783_010 Hb_001136_160--Hb_009783_010 Hb_007122_020 Hb_007122_020 Hb_001136_160--Hb_007122_020 Hb_010962_020 Hb_010962_020 Hb_001136_160--Hb_010962_020 Hb_012132_050 Hb_012132_050 Hb_001136_160--Hb_012132_050 Hb_001898_040--Hb_009783_010 Hb_001898_040--Hb_010962_020 Hb_001898_040--Hb_001136_040 Hb_001898_040--Hb_012132_050 Hb_007185_050 Hb_007185_050 Hb_001898_040--Hb_007185_050 Hb_001136_040--Hb_007185_050 Hb_001136_040--Hb_009783_010 Hb_011853_020 Hb_011853_020 Hb_001136_040--Hb_011853_020 Hb_000009_280 Hb_000009_280 Hb_001136_040--Hb_000009_280 Hb_007904_280 Hb_007904_280 Hb_009783_010--Hb_007904_280 Hb_009783_010--Hb_012132_050 Hb_009783_010--Hb_007185_050 Hb_001975_110 Hb_001975_110 Hb_007122_020--Hb_001975_110 Hb_000964_040 Hb_000964_040 Hb_007122_020--Hb_000964_040 Hb_150299_010 Hb_150299_010 Hb_007122_020--Hb_150299_010 Hb_002902_060 Hb_002902_060 Hb_007122_020--Hb_002902_060 Hb_007122_020--Hb_001136_040 Hb_001047_090 Hb_001047_090 Hb_010962_020--Hb_001047_090 Hb_010962_020--Hb_002902_060 Hb_006846_040 Hb_006846_040 Hb_010962_020--Hb_006846_040 Hb_000003_280 Hb_000003_280 Hb_010962_020--Hb_000003_280 Hb_012132_050--Hb_007904_280 Hb_001408_080 Hb_001408_080 Hb_012132_050--Hb_001408_080 Hb_003466_010 Hb_003466_010 Hb_012132_050--Hb_003466_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.586702 2.63684 6.13591 0 0.0234928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.124131 2.05723

CAGE analysis