Hb_009783_010

Information

Type -
Description -
Location Contig9783: 34827-36485
Sequence    

Annotation

kegg
ID rcu:RCOM_0670580
description hydrolase, hydrolyzing O-glycosyl compounds, putative
nr
ID XP_011002402.1
description PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
swissprot
ID Q9FZ86
description PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana GN=PDCB3 PE=1 SV=1
trembl
ID A0A067L6E8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00472 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64258: 34735-35783 , PASA_asmbl_64259: 35795-36448
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009783_010 0.0 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
2 Hb_007904_280 0.0639041243 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
3 Hb_001898_040 0.0663515427 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
4 Hb_012132_050 0.066873017 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
5 Hb_001136_040 0.0671876106 - - amino acid transporter, putative [Ricinus communis]
6 Hb_001136_160 0.0723240347 - - catalytic, putative [Ricinus communis]
7 Hb_007185_050 0.07286825 - - hypothetical protein JCGZ_22475 [Jatropha curcas]
8 Hb_000230_410 0.0763403143 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
9 Hb_002874_200 0.0780164655 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
10 Hb_000964_040 0.080116879 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform X2 [Jatropha curcas]
11 Hb_004032_290 0.085748521 - - protein binding protein, putative [Ricinus communis]
12 Hb_000395_310 0.0873470417 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
13 Hb_002471_130 0.0877521534 - - PREDICTED: probable transmembrane ascorbate ferrireductase 3 [Jatropha curcas]
14 Hb_000009_280 0.0898748495 - - Calmodulin, putative [Ricinus communis]
15 Hb_000345_550 0.0901915824 - - PREDICTED: uncharacterized protein LOC105629456 [Jatropha curcas]
16 Hb_000903_040 0.0905447835 - - PREDICTED: pirin-like protein [Jatropha curcas]
17 Hb_009785_030 0.0909341147 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
18 Hb_009023_010 0.0917773705 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]
19 Hb_000012_350 0.0934998108 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
20 Hb_000003_280 0.0948841847 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009783_010 Hb_009783_010 Hb_007904_280 Hb_007904_280 Hb_009783_010--Hb_007904_280 Hb_001898_040 Hb_001898_040 Hb_009783_010--Hb_001898_040 Hb_012132_050 Hb_012132_050 Hb_009783_010--Hb_012132_050 Hb_001136_040 Hb_001136_040 Hb_009783_010--Hb_001136_040 Hb_001136_160 Hb_001136_160 Hb_009783_010--Hb_001136_160 Hb_007185_050 Hb_007185_050 Hb_009783_010--Hb_007185_050 Hb_007904_280--Hb_012132_050 Hb_004223_060 Hb_004223_060 Hb_007904_280--Hb_004223_060 Hb_000878_050 Hb_000878_050 Hb_007904_280--Hb_000878_050 Hb_007904_280--Hb_001136_160 Hb_000012_350 Hb_000012_350 Hb_007904_280--Hb_000012_350 Hb_001898_040--Hb_001136_160 Hb_010962_020 Hb_010962_020 Hb_001898_040--Hb_010962_020 Hb_001898_040--Hb_001136_040 Hb_001898_040--Hb_012132_050 Hb_001898_040--Hb_007185_050 Hb_012132_050--Hb_001136_160 Hb_001408_080 Hb_001408_080 Hb_012132_050--Hb_001408_080 Hb_003466_010 Hb_003466_010 Hb_012132_050--Hb_003466_010 Hb_001136_040--Hb_007185_050 Hb_001136_040--Hb_001136_160 Hb_011853_020 Hb_011853_020 Hb_001136_040--Hb_011853_020 Hb_000009_280 Hb_000009_280 Hb_001136_040--Hb_000009_280 Hb_007122_020 Hb_007122_020 Hb_001136_160--Hb_007122_020 Hb_001136_160--Hb_010962_020 Hb_007185_050--Hb_000009_280 Hb_004032_290 Hb_004032_290 Hb_007185_050--Hb_004032_290 Hb_002874_200 Hb_002874_200 Hb_007185_050--Hb_002874_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0267204 2.53156 8.701 23.3018 0.209291 0.125654
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.487254 9.75529

CAGE analysis