Hb_007122_020

Information

Type -
Description -
Location Contig7122: 62919-72050
Sequence    

Annotation

kegg
ID rcu:RCOM_0904910
description multidrug resistance pump, putative
nr
ID XP_012091356.1
description PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID B9RXM3
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0904910 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55344: 62781-64565 , PASA_asmbl_55346: 68282-72036
cDNA
(Sanger)
(ID:Location)		 008_G07.ab1: 70779-72036 , 025_A09.ab1: 70555-72040 , 031_O14.ab1: 70563-72040 , 050_D11.ab1: 71717-71926 , 052_J20.ab1: 70523-72040 , 052_P04.ab1: 70605-72036

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007122_020 0.0 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
2 Hb_001975_110 0.0696597303 - - -
3 Hb_001136_160 0.0723417619 - - catalytic, putative [Ricinus communis]
4 Hb_000964_040 0.0732844787 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform X2 [Jatropha curcas]
5 Hb_150299_010 0.0801299277 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Tarenaya hassleriana]
6 Hb_002902_060 0.0802770316 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
7 Hb_001136_040 0.0850927758 - - amino acid transporter, putative [Ricinus communis]
8 Hb_015292_020 0.087004687 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_001898_040 0.0898513784 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
10 Hb_000003_370 0.0912759155 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
11 Hb_050898_030 0.0914902263 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000724_060 0.0920851549 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
13 Hb_002636_120 0.0926839515 - - Protein bem46, putative [Ricinus communis]
14 Hb_001025_130 0.0928534425 - - PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
15 Hb_000317_380 0.0942018941 - - Peroxidase 47 precursor, putative [Ricinus communis]
16 Hb_001818_010 0.0942164405 - - Disease resistance response protein, putative [Ricinus communis]
17 Hb_001789_230 0.0948617468 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000005_290 0.0953102464 - - Serine carboxypeptidase, putative [Ricinus communis]
19 Hb_000866_130 0.0955519984 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
20 Hb_012132_050 0.0960538177 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]

Gene co-expression network

sample Hb_007122_020 Hb_007122_020 Hb_001975_110 Hb_001975_110 Hb_007122_020--Hb_001975_110 Hb_001136_160 Hb_001136_160 Hb_007122_020--Hb_001136_160 Hb_000964_040 Hb_000964_040 Hb_007122_020--Hb_000964_040 Hb_150299_010 Hb_150299_010 Hb_007122_020--Hb_150299_010 Hb_002902_060 Hb_002902_060 Hb_007122_020--Hb_002902_060 Hb_001136_040 Hb_001136_040 Hb_007122_020--Hb_001136_040 Hb_000005_290 Hb_000005_290 Hb_001975_110--Hb_000005_290 Hb_002309_020 Hb_002309_020 Hb_001975_110--Hb_002309_020 Hb_002636_120 Hb_002636_120 Hb_001975_110--Hb_002636_120 Hb_000317_380 Hb_000317_380 Hb_001975_110--Hb_000317_380 Hb_002783_100 Hb_002783_100 Hb_001975_110--Hb_002783_100 Hb_001898_040 Hb_001898_040 Hb_001136_160--Hb_001898_040 Hb_001136_160--Hb_001136_040 Hb_009783_010 Hb_009783_010 Hb_001136_160--Hb_009783_010 Hb_010962_020 Hb_010962_020 Hb_001136_160--Hb_010962_020 Hb_012132_050 Hb_012132_050 Hb_001136_160--Hb_012132_050 Hb_000964_040--Hb_150299_010 Hb_000964_040--Hb_009783_010 Hb_001789_230 Hb_001789_230 Hb_000964_040--Hb_001789_230 Hb_000964_040--Hb_012132_050 Hb_004607_060 Hb_004607_060 Hb_000964_040--Hb_004607_060 Hb_005127_050 Hb_005127_050 Hb_150299_010--Hb_005127_050 Hb_000261_070 Hb_000261_070 Hb_150299_010--Hb_000261_070 Hb_150299_010--Hb_004607_060 Hb_150299_010--Hb_001789_230 Hb_002902_060--Hb_010962_020 Hb_001047_090 Hb_001047_090 Hb_002902_060--Hb_001047_090 Hb_001709_120 Hb_001709_120 Hb_002902_060--Hb_001709_120 Hb_015292_020 Hb_015292_020 Hb_002902_060--Hb_015292_020 Hb_002902_060--Hb_001975_110 Hb_007185_050 Hb_007185_050 Hb_001136_040--Hb_007185_050 Hb_001136_040--Hb_009783_010 Hb_001136_040--Hb_001898_040 Hb_011853_020 Hb_011853_020 Hb_001136_040--Hb_011853_020 Hb_000009_280 Hb_000009_280 Hb_001136_040--Hb_000009_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0476518 3.67476 18.1537 48.6899 0.258466 0.0409896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.601305 11.7021

CAGE analysis