Hb_000261_070

Information

Type -
Description -
Location Contig261: 39179-40240
Sequence    

Annotation

kegg
ID rcu:RCOM_1018000
description ubiquitin-protein ligase, putative
nr
ID XP_012071267.1
description PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
swissprot
ID Q8GXC7
description F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1
trembl
ID A0A067L4B5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01097 PE=4 SV=1
Gene Ontology
ID GO:0016874
description f-box kelch-repeat protein at3g06240-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27237: 40107-40404
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_070 0.0 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
2 Hb_150299_010 0.0957040775 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Tarenaya hassleriana]
3 Hb_000003_370 0.1042672031 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
4 Hb_007904_280 0.1072899952 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
5 Hb_000964_040 0.110631216 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform X2 [Jatropha curcas]
6 Hb_009785_030 0.1132271645 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
7 Hb_004223_060 0.1153572175 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
8 Hb_000012_350 0.1177699267 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
9 Hb_000878_050 0.1184260263 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
10 Hb_000345_550 0.1193064347 - - PREDICTED: uncharacterized protein LOC105629456 [Jatropha curcas]
11 Hb_006586_040 0.1211235361 - - hypothetical protein POPTR_0011s11750g [Populus trichocarpa]
12 Hb_009783_010 0.121892807 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
13 Hb_000003_610 0.1247099636 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase [Jatropha curcas]
14 Hb_005127_050 0.1279465735 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
15 Hb_033720_030 0.1281504019 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
16 Hb_011574_020 0.1297126023 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
17 Hb_007122_020 0.1303041536 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
18 Hb_020738_010 0.1318648052 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
19 Hb_000103_450 0.1322383237 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
20 Hb_000680_060 0.1348481616 - - hypothetical protein POPTR_0001s20790g [Populus trichocarpa]

Gene co-expression network

sample Hb_000261_070 Hb_000261_070 Hb_150299_010 Hb_150299_010 Hb_000261_070--Hb_150299_010 Hb_000003_370 Hb_000003_370 Hb_000261_070--Hb_000003_370 Hb_007904_280 Hb_007904_280 Hb_000261_070--Hb_007904_280 Hb_000964_040 Hb_000964_040 Hb_000261_070--Hb_000964_040 Hb_009785_030 Hb_009785_030 Hb_000261_070--Hb_009785_030 Hb_004223_060 Hb_004223_060 Hb_000261_070--Hb_004223_060 Hb_005127_050 Hb_005127_050 Hb_150299_010--Hb_005127_050 Hb_150299_010--Hb_000964_040 Hb_007122_020 Hb_007122_020 Hb_150299_010--Hb_007122_020 Hb_004607_060 Hb_004607_060 Hb_150299_010--Hb_004607_060 Hb_001789_230 Hb_001789_230 Hb_150299_010--Hb_001789_230 Hb_011618_110 Hb_011618_110 Hb_000003_370--Hb_011618_110 Hb_011853_020 Hb_011853_020 Hb_000003_370--Hb_011853_020 Hb_004202_020 Hb_004202_020 Hb_000003_370--Hb_004202_020 Hb_002636_120 Hb_002636_120 Hb_000003_370--Hb_002636_120 Hb_001136_160 Hb_001136_160 Hb_000003_370--Hb_001136_160 Hb_000003_370--Hb_004223_060 Hb_012132_050 Hb_012132_050 Hb_007904_280--Hb_012132_050 Hb_009783_010 Hb_009783_010 Hb_007904_280--Hb_009783_010 Hb_007904_280--Hb_004223_060 Hb_000878_050 Hb_000878_050 Hb_007904_280--Hb_000878_050 Hb_007904_280--Hb_001136_160 Hb_000012_350 Hb_000012_350 Hb_007904_280--Hb_000012_350 Hb_000964_040--Hb_007122_020 Hb_000964_040--Hb_009783_010 Hb_000964_040--Hb_001789_230 Hb_000964_040--Hb_012132_050 Hb_000964_040--Hb_004607_060 Hb_000345_550 Hb_000345_550 Hb_009785_030--Hb_000345_550 Hb_009785_030--Hb_009783_010 Hb_009785_030--Hb_000012_350 Hb_002874_200 Hb_002874_200 Hb_009785_030--Hb_002874_200 Hb_009785_030--Hb_007904_280 Hb_009785_030--Hb_012132_050 Hb_004223_060--Hb_000878_050 Hb_000077_280 Hb_000077_280 Hb_004223_060--Hb_000077_280 Hb_000103_450 Hb_000103_450 Hb_004223_060--Hb_000103_450 Hb_000392_110 Hb_000392_110 Hb_004223_060--Hb_000392_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0256813 0.0684615 0.300984 0.632775 0.0192686 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0148593 0.228031

CAGE analysis