Hb_000003_370

Information

Type transcription factor
Description TF Family: GRAS
Location Contig3: 221904-223349
Sequence    

Annotation

kegg
ID rcu:RCOM_1453680
description transcription factor, putative
nr
ID XP_012068606.1
description PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
swissprot
ID Q9LPR8
description Scarecrow-like protein 3 OS=Arabidopsis thaliana GN=SCL3 PE=2 SV=1
trembl
ID A0A067KWA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24495 PE=4 SV=1
Gene Ontology
ID GO:0005634
description scarecrow-like protein 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31409: 221716-222453
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_370 0.0 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
2 Hb_011618_110 0.0752326554 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
3 Hb_011853_020 0.0766290906 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
4 Hb_004202_020 0.0786827546 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002636_120 0.0798976718 - - Protein bem46, putative [Ricinus communis]
6 Hb_001136_160 0.0813594941 - - catalytic, putative [Ricinus communis]
7 Hb_004223_060 0.081800464 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
8 Hb_000103_450 0.0866616045 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
9 Hb_007122_020 0.0912759155 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
10 Hb_001136_040 0.0923334993 - - amino acid transporter, putative [Ricinus communis]
11 Hb_000077_280 0.0934900159 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_001025_130 0.0965256941 - - PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
13 Hb_003376_020 0.0967327375 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_096027_010 0.0977165911 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_000392_110 0.0977786126 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
16 Hb_010407_130 0.0981386971 - - hypothetical protein POPTR_0008s16680g [Populus trichocarpa]
17 Hb_020738_010 0.0982887968 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
18 Hb_000878_050 0.0988924417 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
19 Hb_040852_010 0.0990759195 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007904_280 0.0999325981 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]

Gene co-expression network

sample Hb_000003_370 Hb_000003_370 Hb_011618_110 Hb_011618_110 Hb_000003_370--Hb_011618_110 Hb_011853_020 Hb_011853_020 Hb_000003_370--Hb_011853_020 Hb_004202_020 Hb_004202_020 Hb_000003_370--Hb_004202_020 Hb_002636_120 Hb_002636_120 Hb_000003_370--Hb_002636_120 Hb_001136_160 Hb_001136_160 Hb_000003_370--Hb_001136_160 Hb_004223_060 Hb_004223_060 Hb_000003_370--Hb_004223_060 Hb_011618_110--Hb_002636_120 Hb_011618_110--Hb_011853_020 Hb_096027_010 Hb_096027_010 Hb_011618_110--Hb_096027_010 Hb_011618_110--Hb_004202_020 Hb_001975_110 Hb_001975_110 Hb_011618_110--Hb_001975_110 Hb_011853_020--Hb_096027_010 Hb_001136_040 Hb_001136_040 Hb_011853_020--Hb_001136_040 Hb_011853_020--Hb_001136_160 Hb_011853_020--Hb_002636_120 Hb_000483_450 Hb_000483_450 Hb_004202_020--Hb_000483_450 Hb_001047_090 Hb_001047_090 Hb_004202_020--Hb_001047_090 Hb_040852_010 Hb_040852_010 Hb_004202_020--Hb_040852_010 Hb_003894_110 Hb_003894_110 Hb_004202_020--Hb_003894_110 Hb_000392_110 Hb_000392_110 Hb_004202_020--Hb_000392_110 Hb_003376_020 Hb_003376_020 Hb_004202_020--Hb_003376_020 Hb_002636_120--Hb_001975_110 Hb_026218_010 Hb_026218_010 Hb_002636_120--Hb_026218_010 Hb_002636_120--Hb_096027_010 Hb_001898_040 Hb_001898_040 Hb_001136_160--Hb_001898_040 Hb_001136_160--Hb_001136_040 Hb_009783_010 Hb_009783_010 Hb_001136_160--Hb_009783_010 Hb_007122_020 Hb_007122_020 Hb_001136_160--Hb_007122_020 Hb_010962_020 Hb_010962_020 Hb_001136_160--Hb_010962_020 Hb_012132_050 Hb_012132_050 Hb_001136_160--Hb_012132_050 Hb_007904_280 Hb_007904_280 Hb_004223_060--Hb_007904_280 Hb_000878_050 Hb_000878_050 Hb_004223_060--Hb_000878_050 Hb_000077_280 Hb_000077_280 Hb_004223_060--Hb_000077_280 Hb_000103_450 Hb_000103_450 Hb_004223_060--Hb_000103_450 Hb_004223_060--Hb_000392_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.071122 0.55947 3.53162 6.73954 0.0133889 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0614156 2.46266

CAGE analysis