Hb_003376_020

Information

Type -
Description -
Location Contig3376: 16911-19423
Sequence    

Annotation

kegg
ID rcu:RCOM_0819600
description ATP binding protein, putative
nr
ID XP_012082289.1
description PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9ZQC5
description Interactor of constitutive active ROPs 2, chloroplastic OS=Arabidopsis thaliana GN=ICR2 PE=1 SV=1
trembl
ID A0A067JYN3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16465 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35317: 16928-22066 , PASA_asmbl_35318: 18534-22000
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_020 0.0 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_040852_010 0.0592750318 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003894_110 0.0593759983 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
4 Hb_152910_050 0.0597857597 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
5 Hb_098315_060 0.0639855729 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
6 Hb_000134_130 0.0659169252 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
7 Hb_000103_220 0.0674763348 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
8 Hb_004202_020 0.0681988085 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000483_450 0.0724563233 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
10 Hb_017434_010 0.0779794645 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
11 Hb_000003_380 0.0781353504 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001021_120 0.0819032499 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]
13 Hb_002221_060 0.0848490885 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
14 Hb_004137_040 0.0863054518 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
15 Hb_000320_010 0.0874532259 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012653_050 0.0900101572 - - hypothetical protein RCOM_0460020 [Ricinus communis]
17 Hb_000009_270 0.0964735798 - - Calmodulin, putative [Ricinus communis]
18 Hb_001956_130 0.0965553699 - - catalytic, putative [Ricinus communis]
19 Hb_000003_370 0.0967327375 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
20 Hb_000392_110 0.0970750999 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003376_020 Hb_003376_020 Hb_040852_010 Hb_040852_010 Hb_003376_020--Hb_040852_010 Hb_003894_110 Hb_003894_110 Hb_003376_020--Hb_003894_110 Hb_152910_050 Hb_152910_050 Hb_003376_020--Hb_152910_050 Hb_098315_060 Hb_098315_060 Hb_003376_020--Hb_098315_060 Hb_000134_130 Hb_000134_130 Hb_003376_020--Hb_000134_130 Hb_000103_220 Hb_000103_220 Hb_003376_020--Hb_000103_220 Hb_040852_010--Hb_152910_050 Hb_040852_010--Hb_003894_110 Hb_040852_010--Hb_098315_060 Hb_040852_010--Hb_000134_130 Hb_004202_020 Hb_004202_020 Hb_040852_010--Hb_004202_020 Hb_003894_110--Hb_152910_050 Hb_003894_110--Hb_098315_060 Hb_003894_110--Hb_000134_130 Hb_003894_110--Hb_004202_020 Hb_152910_050--Hb_098315_060 Hb_152910_050--Hb_000134_130 Hb_017434_010 Hb_017434_010 Hb_152910_050--Hb_017434_010 Hb_152910_050--Hb_000103_220 Hb_098315_060--Hb_000134_130 Hb_098315_060--Hb_017434_010 Hb_098315_060--Hb_000103_220 Hb_001021_120 Hb_001021_120 Hb_000134_130--Hb_001021_120 Hb_000103_220--Hb_017434_010 Hb_017383_010 Hb_017383_010 Hb_000103_220--Hb_017383_010 Hb_000103_220--Hb_040852_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.131493 1.76477 29.8002 39.2635 0.0897166 0.0604282
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0210396 0.0496649 0.0314452 0.309376 17.5599

CAGE analysis