Hb_000103_220

Information

Type -
Description -
Location Contig103: 194684-198722
Sequence    

Annotation

kegg
ID rcu:RCOM_0911120
description ice binding protein, putative
nr
ID XP_012069694.1
description PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KVM6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02224 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ice binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01201: 194661-198601
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_220 0.0 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
2 Hb_017434_010 0.0432029433 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
3 Hb_152910_050 0.0594022239 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
4 Hb_098315_060 0.0599179913 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
5 Hb_017383_010 0.0667880624 - - PREDICTED: uncharacterized protein LOC105628176 [Jatropha curcas]
6 Hb_003376_020 0.0674763348 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_040852_010 0.0704643952 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010449_010 0.0726096479 - - l-ascorbate oxidase, putative [Ricinus communis]
9 Hb_000134_130 0.0773865886 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
10 Hb_004137_110 0.083731217 - - PREDICTED: probable auxin efflux carrier component 6 [Jatropha curcas]
11 Hb_003894_110 0.0880859273 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
12 Hb_000077_280 0.0904450024 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_031321_020 0.0912244349 - - hypothetical protein POPTR_0003s15520g [Populus trichocarpa]
14 Hb_000032_420 0.0918501599 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
15 Hb_000009_270 0.0920158061 - - Calmodulin, putative [Ricinus communis]
16 Hb_001021_120 0.0928272769 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]
17 Hb_001080_190 0.0949409802 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
18 Hb_000003_380 0.0961658268 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000441_130 0.0987056523 - - PREDICTED: homeobox-leucine zipper protein HOX32 [Vitis vinifera]
20 Hb_001544_090 0.1011250435 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]

Gene co-expression network

sample Hb_000103_220 Hb_000103_220 Hb_017434_010 Hb_017434_010 Hb_000103_220--Hb_017434_010 Hb_152910_050 Hb_152910_050 Hb_000103_220--Hb_152910_050 Hb_098315_060 Hb_098315_060 Hb_000103_220--Hb_098315_060 Hb_017383_010 Hb_017383_010 Hb_000103_220--Hb_017383_010 Hb_003376_020 Hb_003376_020 Hb_000103_220--Hb_003376_020 Hb_040852_010 Hb_040852_010 Hb_000103_220--Hb_040852_010 Hb_017434_010--Hb_098315_060 Hb_017434_010--Hb_152910_050 Hb_000009_270 Hb_000009_270 Hb_017434_010--Hb_000009_270 Hb_010449_010 Hb_010449_010 Hb_017434_010--Hb_010449_010 Hb_001021_120 Hb_001021_120 Hb_017434_010--Hb_001021_120 Hb_152910_050--Hb_040852_010 Hb_152910_050--Hb_098315_060 Hb_003894_110 Hb_003894_110 Hb_152910_050--Hb_003894_110 Hb_000134_130 Hb_000134_130 Hb_152910_050--Hb_000134_130 Hb_098315_060--Hb_040852_010 Hb_098315_060--Hb_000134_130 Hb_098315_060--Hb_003894_110 Hb_017383_010--Hb_010449_010 Hb_000032_420 Hb_000032_420 Hb_017383_010--Hb_000032_420 Hb_000077_280 Hb_000077_280 Hb_017383_010--Hb_000077_280 Hb_017383_010--Hb_017434_010 Hb_001794_040 Hb_001794_040 Hb_017383_010--Hb_001794_040 Hb_003376_020--Hb_040852_010 Hb_003376_020--Hb_003894_110 Hb_003376_020--Hb_152910_050 Hb_003376_020--Hb_098315_060 Hb_003376_020--Hb_000134_130 Hb_040852_010--Hb_003894_110 Hb_040852_010--Hb_000134_130 Hb_004202_020 Hb_004202_020 Hb_040852_010--Hb_004202_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.127205 5.60379 49.3178 53.8808 0.245346 0.200212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0236988 0.0186466 0 0.378503 26.9973

CAGE analysis