Hb_010449_010

Information

Type -
Description -
Location Contig10449: 18953-25484
Sequence    

Annotation

kegg
ID rcu:RCOM_0657480
description l-ascorbate oxidase, putative (EC:1.10.3.3)
nr
ID XP_002530197.1
description l-ascorbate oxidase, putative [Ricinus communis]
swissprot
ID Q40588
description L-ascorbate oxidase OS=Nicotiana tabacum GN=AAO PE=2 SV=1
trembl
ID B9SW28
description L-ascorbate oxidase, putative OS=Ricinus communis GN=RCOM_0657480 PE=4 SV=1
Gene Ontology
ID GO:0005576
description l-ascorbate oxidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01574: 18965-25647
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010449_010 0.0 - - l-ascorbate oxidase, putative [Ricinus communis]
2 Hb_017383_010 0.0509491253 - - PREDICTED: uncharacterized protein LOC105628176 [Jatropha curcas]
3 Hb_000032_420 0.0546408186 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
4 Hb_017434_010 0.0651163141 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
5 Hb_000103_220 0.0726096479 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
6 Hb_000996_070 0.0735403584 - - unnamed protein product [Vitis vinifera]
7 Hb_098315_060 0.0741531614 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
8 Hb_015048_020 0.078468093 - - PREDICTED: myb-like protein D [Jatropha curcas]
9 Hb_004137_110 0.0799560638 - - PREDICTED: probable auxin efflux carrier component 6 [Jatropha curcas]
10 Hb_000441_130 0.085035087 - - PREDICTED: homeobox-leucine zipper protein HOX32 [Vitis vinifera]
11 Hb_152910_050 0.0858942075 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
12 Hb_001794_040 0.0868689558 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
13 Hb_001674_010 0.0891736616 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
14 Hb_001544_090 0.0907400751 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
15 Hb_000009_270 0.0910842741 - - Calmodulin, putative [Ricinus communis]
16 Hb_000680_170 0.0915962184 - - hypothetical protein JCGZ_24789 [Jatropha curcas]
17 Hb_001157_050 0.0957212443 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
18 Hb_002609_120 0.0962543511 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
19 Hb_000077_280 0.0970813353 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_001117_050 0.0974225575 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]

Gene co-expression network

sample Hb_010449_010 Hb_010449_010 Hb_017383_010 Hb_017383_010 Hb_010449_010--Hb_017383_010 Hb_000032_420 Hb_000032_420 Hb_010449_010--Hb_000032_420 Hb_017434_010 Hb_017434_010 Hb_010449_010--Hb_017434_010 Hb_000103_220 Hb_000103_220 Hb_010449_010--Hb_000103_220 Hb_000996_070 Hb_000996_070 Hb_010449_010--Hb_000996_070 Hb_098315_060 Hb_098315_060 Hb_010449_010--Hb_098315_060 Hb_017383_010--Hb_000032_420 Hb_017383_010--Hb_000103_220 Hb_000077_280 Hb_000077_280 Hb_017383_010--Hb_000077_280 Hb_017383_010--Hb_017434_010 Hb_001794_040 Hb_001794_040 Hb_017383_010--Hb_001794_040 Hb_001544_090 Hb_001544_090 Hb_000032_420--Hb_001544_090 Hb_000032_420--Hb_000996_070 Hb_015048_020 Hb_015048_020 Hb_000032_420--Hb_015048_020 Hb_000441_130 Hb_000441_130 Hb_000032_420--Hb_000441_130 Hb_017434_010--Hb_000103_220 Hb_017434_010--Hb_098315_060 Hb_152910_050 Hb_152910_050 Hb_017434_010--Hb_152910_050 Hb_000009_270 Hb_000009_270 Hb_017434_010--Hb_000009_270 Hb_001021_120 Hb_001021_120 Hb_017434_010--Hb_001021_120 Hb_000103_220--Hb_152910_050 Hb_000103_220--Hb_098315_060 Hb_003376_020 Hb_003376_020 Hb_000103_220--Hb_003376_020 Hb_040852_010 Hb_040852_010 Hb_000103_220--Hb_040852_010 Hb_000996_070--Hb_000441_130 Hb_001157_050 Hb_001157_050 Hb_000996_070--Hb_001157_050 Hb_006196_030 Hb_006196_030 Hb_000996_070--Hb_006196_030 Hb_000996_070--Hb_001794_040 Hb_098315_060--Hb_152910_050 Hb_098315_060--Hb_040852_010 Hb_000134_130 Hb_000134_130 Hb_098315_060--Hb_000134_130 Hb_003894_110 Hb_003894_110 Hb_098315_060--Hb_003894_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.137354 10.9373 63.4837 64.9041 0.180641 0.0205273
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.035887 2.27882 34.9099

CAGE analysis