Hb_000996_070

Information

Type -
Description -
Location Contig996: 85254-89650
Sequence    

Annotation

kegg
ID rcu:RCOM_1686310
description GTP binding protein, putative
nr
ID CBI34691.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9SH27
description Protein LURP-one-related 4 OS=Arabidopsis thaliana GN=At1g63410 PE=3 SV=1
trembl
ID A0A067JN93
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20617 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64831: 88538-89660
cDNA
(Sanger)
(ID:Location)		 012_K12.ab1: 88540-89479 , 022_P12.ab1: 88540-89479

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000996_070 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_010449_010 0.0735403584 - - l-ascorbate oxidase, putative [Ricinus communis]
3 Hb_000441_130 0.0765758293 - - PREDICTED: homeobox-leucine zipper protein HOX32 [Vitis vinifera]
4 Hb_000032_420 0.0773763082 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
5 Hb_001157_050 0.0775351705 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
6 Hb_006196_030 0.0870266965 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
7 Hb_001794_040 0.089771968 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
8 Hb_017383_010 0.0915411423 - - PREDICTED: uncharacterized protein LOC105628176 [Jatropha curcas]
9 Hb_002301_400 0.0959487449 - - structural constituent of cell wall, putative [Ricinus communis]
10 Hb_015048_020 0.0963259995 - - PREDICTED: myb-like protein D [Jatropha curcas]
11 Hb_128196_010 0.1013045716 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006922_020 0.1020187849 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
13 Hb_007123_010 0.1025167077 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
14 Hb_001159_090 0.1048634219 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
15 Hb_002490_060 0.1054093754 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
16 Hb_000086_470 0.1054752127 - - hypothetical protein JCGZ_17645 [Jatropha curcas]
17 Hb_001366_290 0.1075105474 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
18 Hb_003207_120 0.109817308 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
19 Hb_012404_020 0.1105659135 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004137_110 0.1109014643 - - PREDICTED: probable auxin efflux carrier component 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000996_070 Hb_000996_070 Hb_010449_010 Hb_010449_010 Hb_000996_070--Hb_010449_010 Hb_000441_130 Hb_000441_130 Hb_000996_070--Hb_000441_130 Hb_000032_420 Hb_000032_420 Hb_000996_070--Hb_000032_420 Hb_001157_050 Hb_001157_050 Hb_000996_070--Hb_001157_050 Hb_006196_030 Hb_006196_030 Hb_000996_070--Hb_006196_030 Hb_001794_040 Hb_001794_040 Hb_000996_070--Hb_001794_040 Hb_017383_010 Hb_017383_010 Hb_010449_010--Hb_017383_010 Hb_010449_010--Hb_000032_420 Hb_017434_010 Hb_017434_010 Hb_010449_010--Hb_017434_010 Hb_000103_220 Hb_000103_220 Hb_010449_010--Hb_000103_220 Hb_098315_060 Hb_098315_060 Hb_010449_010--Hb_098315_060 Hb_000441_130--Hb_000032_420 Hb_000441_130--Hb_017383_010 Hb_000441_130--Hb_010449_010 Hb_004137_110 Hb_004137_110 Hb_000441_130--Hb_004137_110 Hb_000077_280 Hb_000077_280 Hb_000441_130--Hb_000077_280 Hb_000032_420--Hb_017383_010 Hb_001544_090 Hb_001544_090 Hb_000032_420--Hb_001544_090 Hb_015048_020 Hb_015048_020 Hb_000032_420--Hb_015048_020 Hb_001157_050--Hb_015048_020 Hb_007632_160 Hb_007632_160 Hb_001157_050--Hb_007632_160 Hb_001366_290 Hb_001366_290 Hb_001157_050--Hb_001366_290 Hb_000003_750 Hb_000003_750 Hb_001157_050--Hb_000003_750 Hb_128196_010 Hb_128196_010 Hb_001157_050--Hb_128196_010 Hb_001159_090 Hb_001159_090 Hb_006196_030--Hb_001159_090 Hb_002490_060 Hb_002490_060 Hb_006196_030--Hb_002490_060 Hb_002301_400 Hb_002301_400 Hb_006196_030--Hb_002301_400 Hb_006196_030--Hb_001794_040 Hb_007123_010 Hb_007123_010 Hb_006196_030--Hb_007123_010 Hb_001117_050 Hb_001117_050 Hb_001794_040--Hb_001117_050 Hb_000012_350 Hb_000012_350 Hb_001794_040--Hb_000012_350 Hb_020738_010 Hb_020738_010 Hb_001794_040--Hb_020738_010 Hb_001794_040--Hb_017383_010 Hb_001794_040--Hb_000032_420 Hb_001794_040--Hb_010449_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0167086 0.888558 3.75652 3.63799 0.0167488 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0381368 0 0 0.228124 1.74332

CAGE analysis