Hb_006196_030

Information

Type -
Description -
Location Contig6196: 36400-39189
Sequence    

Annotation

kegg
ID rcu:RCOM_1158810
description hypothetical protein
nr
ID XP_012093008.1
description PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9T1N2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1158810 PE=4 SV=1
Gene Ontology
ID GO:0005840
description checkpoint serine threonine-protein kinase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51360: 36350-39842 , PASA_asmbl_51361: 37859-39114
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006196_030 0.0 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
2 Hb_001159_090 0.0845196837 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
3 Hb_002490_060 0.0858623888 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
4 Hb_000996_070 0.0870266965 - - unnamed protein product [Vitis vinifera]
5 Hb_002301_400 0.0890197895 - - structural constituent of cell wall, putative [Ricinus communis]
6 Hb_001794_040 0.0918887315 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
7 Hb_007123_010 0.0941033072 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
8 Hb_006922_020 0.0952559713 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
9 Hb_000103_370 0.0958196608 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
10 Hb_001366_290 0.0980888039 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
11 Hb_000809_130 0.1029441646 - - PREDICTED: peroxidase 10 isoform X3 [Jatropha curcas]
12 Hb_001157_050 0.1033306906 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
13 Hb_012404_020 0.1080933462 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000375_260 0.1085479444 - - cyanohydrin UDP-glucosyltransferase UGT85K4 [Manihot esculenta]
15 Hb_021576_130 0.1132945495 - - PREDICTED: chorismate mutase 2 isoform X1 [Jatropha curcas]
16 Hb_169893_010 0.1140280113 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
17 Hb_015048_020 0.1140428308 - - PREDICTED: myb-like protein D [Jatropha curcas]
18 Hb_002639_050 0.1149667262 - - multicopper oxidase, putative [Ricinus communis]
19 Hb_001195_550 0.1162516502 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
20 Hb_000032_420 0.1165413133 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]

Gene co-expression network

sample Hb_006196_030 Hb_006196_030 Hb_001159_090 Hb_001159_090 Hb_006196_030--Hb_001159_090 Hb_002490_060 Hb_002490_060 Hb_006196_030--Hb_002490_060 Hb_000996_070 Hb_000996_070 Hb_006196_030--Hb_000996_070 Hb_002301_400 Hb_002301_400 Hb_006196_030--Hb_002301_400 Hb_001794_040 Hb_001794_040 Hb_006196_030--Hb_001794_040 Hb_007123_010 Hb_007123_010 Hb_006196_030--Hb_007123_010 Hb_000375_260 Hb_000375_260 Hb_001159_090--Hb_000375_260 Hb_001159_090--Hb_002301_400 Hb_001157_050 Hb_001157_050 Hb_001159_090--Hb_001157_050 Hb_003750_120 Hb_003750_120 Hb_001159_090--Hb_003750_120 Hb_000359_100 Hb_000359_100 Hb_001159_090--Hb_000359_100 Hb_000627_040 Hb_000627_040 Hb_002490_060--Hb_000627_040 Hb_006922_020 Hb_006922_020 Hb_002490_060--Hb_006922_020 Hb_001366_290 Hb_001366_290 Hb_002490_060--Hb_001366_290 Hb_007237_020 Hb_007237_020 Hb_002490_060--Hb_007237_020 Hb_002490_060--Hb_007123_010 Hb_010449_010 Hb_010449_010 Hb_000996_070--Hb_010449_010 Hb_000441_130 Hb_000441_130 Hb_000996_070--Hb_000441_130 Hb_000032_420 Hb_000032_420 Hb_000996_070--Hb_000032_420 Hb_000996_070--Hb_001157_050 Hb_000996_070--Hb_001794_040 Hb_070498_010 Hb_070498_010 Hb_002301_400--Hb_070498_010 Hb_128196_010 Hb_128196_010 Hb_002301_400--Hb_128196_010 Hb_012404_020 Hb_012404_020 Hb_002301_400--Hb_012404_020 Hb_001195_550 Hb_001195_550 Hb_002301_400--Hb_001195_550 Hb_001117_050 Hb_001117_050 Hb_001794_040--Hb_001117_050 Hb_000012_350 Hb_000012_350 Hb_001794_040--Hb_000012_350 Hb_020738_010 Hb_020738_010 Hb_001794_040--Hb_020738_010 Hb_017383_010 Hb_017383_010 Hb_001794_040--Hb_017383_010 Hb_001794_040--Hb_000032_420 Hb_001794_040--Hb_010449_010 Hb_007123_010--Hb_006922_020 Hb_000103_370 Hb_000103_370 Hb_007123_010--Hb_000103_370 Hb_021576_130 Hb_021576_130 Hb_007123_010--Hb_021576_130 Hb_004228_070 Hb_004228_070 Hb_007123_010--Hb_004228_070 Hb_054926_010 Hb_054926_010 Hb_007123_010--Hb_054926_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0112865 1.97899 5.85783 6.16199 0.0218719 0.071449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.506869 2.33929

CAGE analysis