Hb_006922_020

Information

Type -
Description -
Location Contig6922: 58832-62233
Sequence    

Annotation

kegg
ID pop:POPTR_0015s01610g
description POPTRDRAFT_1100752; hypothetical protein
nr
ID XP_012084535.1
description PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
swissprot
ID Q9M3B0
description Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1
trembl
ID A0A067JU95
description Pectinesterase OS=Jatropha curcas GN=JCGZ_20123 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable pectinesterase pectinesterase inhibitor 34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54472: 59087-62225 , PASA_asmbl_54473: 59087-62225 , PASA_asmbl_54474: 61153-61323
cDNA
(Sanger)
(ID:Location)		 033_I10.ab1: 59989-61662

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006922_020 0.0 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
2 Hb_007123_010 0.0588211388 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
3 Hb_002490_060 0.0639945622 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
4 Hb_000627_040 0.0803875609 - - leucine-rich repeat protein, putative [Ricinus communis]
5 Hb_002053_180 0.0841647844 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
6 Hb_000103_370 0.0863910106 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
7 Hb_004228_070 0.0884456869 - - PREDICTED: uncharacterized protein LOC103338699 [Prunus mume]
8 Hb_039075_020 0.0884735258 - - PREDICTED: uncharacterized protein LOC103331245 [Prunus mume]
9 Hb_021576_130 0.0893259383 - - PREDICTED: chorismate mutase 2 isoform X1 [Jatropha curcas]
10 Hb_006196_030 0.0952559713 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
11 Hb_001366_290 0.0977561975 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
12 Hb_000199_040 0.0984707011 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
13 Hb_044653_050 0.0997553481 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
14 Hb_000996_070 0.1020187849 - - unnamed protein product [Vitis vinifera]
15 Hb_007130_020 0.102824716 - - -
16 Hb_121313_010 0.1045907094 - - PREDICTED: endoglucanase 24-like [Jatropha curcas]
17 Hb_000836_090 0.1077541926 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
18 Hb_001157_050 0.1095444324 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
19 Hb_003873_020 0.1097209689 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
20 Hb_028008_040 0.1124239791 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006922_020 Hb_006922_020 Hb_007123_010 Hb_007123_010 Hb_006922_020--Hb_007123_010 Hb_002490_060 Hb_002490_060 Hb_006922_020--Hb_002490_060 Hb_000627_040 Hb_000627_040 Hb_006922_020--Hb_000627_040 Hb_002053_180 Hb_002053_180 Hb_006922_020--Hb_002053_180 Hb_000103_370 Hb_000103_370 Hb_006922_020--Hb_000103_370 Hb_004228_070 Hb_004228_070 Hb_006922_020--Hb_004228_070 Hb_007123_010--Hb_000103_370 Hb_021576_130 Hb_021576_130 Hb_007123_010--Hb_021576_130 Hb_007123_010--Hb_004228_070 Hb_054926_010 Hb_054926_010 Hb_007123_010--Hb_054926_010 Hb_007123_010--Hb_002490_060 Hb_002490_060--Hb_000627_040 Hb_001366_290 Hb_001366_290 Hb_002490_060--Hb_001366_290 Hb_006196_030 Hb_006196_030 Hb_002490_060--Hb_006196_030 Hb_007237_020 Hb_007237_020 Hb_002490_060--Hb_007237_020 Hb_000627_040--Hb_007237_020 Hb_121313_010 Hb_121313_010 Hb_000627_040--Hb_121313_010 Hb_005730_110 Hb_005730_110 Hb_000627_040--Hb_005730_110 Hb_000627_040--Hb_002053_180 Hb_000199_040 Hb_000199_040 Hb_002053_180--Hb_000199_040 Hb_002053_180--Hb_007237_020 Hb_000836_090 Hb_000836_090 Hb_002053_180--Hb_000836_090 Hb_002053_180--Hb_002490_060 Hb_000002_370 Hb_000002_370 Hb_000103_370--Hb_000002_370 Hb_000103_370--Hb_054926_010 Hb_008019_010 Hb_008019_010 Hb_000103_370--Hb_008019_010 Hb_000809_130 Hb_000809_130 Hb_000103_370--Hb_000809_130 Hb_004228_070--Hb_021576_130 Hb_002205_150 Hb_002205_150 Hb_004228_070--Hb_002205_150 Hb_003454_050 Hb_003454_050 Hb_004228_070--Hb_003454_050 Hb_044653_050 Hb_044653_050 Hb_004228_070--Hb_044653_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.191071 105.635 309.761 257.694 0.130332 0.422138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.309433 2.87614 1.21624 33.5116 155.411

CAGE analysis