Hb_000199_040

Information

Type desease resistance
Description Gene Name: TIR
Location Contig199: 140094-143200
Sequence    

Annotation

kegg
ID cit:102627554
description TMV resistance protein N-like
nr
ID XP_012068500.1
description PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067DIX5
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g044535mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19963: 140257-140443
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000199_040 0.0 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
2 Hb_002053_180 0.0704409126 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
3 Hb_000002_370 0.0771105462 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
4 Hb_003777_120 0.0811619524 - - -
5 Hb_006922_020 0.0984707011 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
6 Hb_000878_090 0.0996167284 - - sucrose-phosphatase family protein [Populus trichocarpa]
7 Hb_002490_060 0.1004839154 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
8 Hb_005486_020 0.1004938386 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
9 Hb_000836_090 0.1034504822 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
10 Hb_008749_010 0.1041299357 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
11 Hb_004040_010 0.1041766831 - - hypothetical protein POPTR_0019s14250g [Populus trichocarpa]
12 Hb_044653_050 0.1067252153 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
13 Hb_000103_370 0.1067635968 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
14 Hb_007130_020 0.1101418324 - - -
15 Hb_008019_010 0.1108094272 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
16 Hb_007237_020 0.1109834878 - - PREDICTED: protein trichome birefringence-like 23 [Jatropha curcas]
17 Hb_000627_040 0.1123577811 - - leucine-rich repeat protein, putative [Ricinus communis]
18 Hb_000990_040 0.1158922704 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 7 [Jatropha curcas]
19 Hb_003531_050 0.1176951362 - - PREDICTED: pyridoxal reductase, chloroplastic [Jatropha curcas]
20 Hb_007123_010 0.1193816112 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000199_040 Hb_000199_040 Hb_002053_180 Hb_002053_180 Hb_000199_040--Hb_002053_180 Hb_000002_370 Hb_000002_370 Hb_000199_040--Hb_000002_370 Hb_003777_120 Hb_003777_120 Hb_000199_040--Hb_003777_120 Hb_006922_020 Hb_006922_020 Hb_000199_040--Hb_006922_020 Hb_000878_090 Hb_000878_090 Hb_000199_040--Hb_000878_090 Hb_002490_060 Hb_002490_060 Hb_000199_040--Hb_002490_060 Hb_000627_040 Hb_000627_040 Hb_002053_180--Hb_000627_040 Hb_007237_020 Hb_007237_020 Hb_002053_180--Hb_007237_020 Hb_002053_180--Hb_006922_020 Hb_000836_090 Hb_000836_090 Hb_002053_180--Hb_000836_090 Hb_002053_180--Hb_002490_060 Hb_000103_370 Hb_000103_370 Hb_000002_370--Hb_000103_370 Hb_000002_370--Hb_003777_120 Hb_000002_370--Hb_002053_180 Hb_000002_370--Hb_000836_090 Hb_004567_070 Hb_004567_070 Hb_000002_370--Hb_004567_070 Hb_074966_010 Hb_074966_010 Hb_003777_120--Hb_074966_010 Hb_001926_020 Hb_001926_020 Hb_003777_120--Hb_001926_020 Hb_032731_010 Hb_032731_010 Hb_003777_120--Hb_032731_010 Hb_059318_010 Hb_059318_010 Hb_003777_120--Hb_059318_010 Hb_007123_010 Hb_007123_010 Hb_006922_020--Hb_007123_010 Hb_006922_020--Hb_002490_060 Hb_006922_020--Hb_000627_040 Hb_006922_020--Hb_000103_370 Hb_004228_070 Hb_004228_070 Hb_006922_020--Hb_004228_070 Hb_009907_020 Hb_009907_020 Hb_000878_090--Hb_009907_020 Hb_001160_050 Hb_001160_050 Hb_000878_090--Hb_001160_050 Hb_008749_010 Hb_008749_010 Hb_000878_090--Hb_008749_010 Hb_002374_030 Hb_002374_030 Hb_000878_090--Hb_002374_030 Hb_004040_010 Hb_004040_010 Hb_000878_090--Hb_004040_010 Hb_000152_410 Hb_000152_410 Hb_000878_090--Hb_000152_410 Hb_002490_060--Hb_000627_040 Hb_001366_290 Hb_001366_290 Hb_002490_060--Hb_001366_290 Hb_006196_030 Hb_006196_030 Hb_002490_060--Hb_006196_030 Hb_002490_060--Hb_007237_020 Hb_002490_060--Hb_007123_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0238595 1.34834 3.50327 1.88822 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0142052 0 0.400565 1.44869

CAGE analysis