Hb_001160_050

Information

Type -
Description -
Location Contig1160: 23107-27097
Sequence    

Annotation

kegg
ID cic:CICLE_v10004405mg
description hypothetical protein
nr
ID XP_012069873.1
description PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
swissprot
ID B5WWZ8
description Long-chain-alcohol oxidase FAO1 OS=Lotus japonicus GN=FAO1 PE=1 SV=1
trembl
ID A0A067KVY5
description Long-chain-alcohol oxidase OS=Jatropha curcas GN=JCGZ_02359 PE=3 SV=1
Gene Ontology
ID GO:0046577
description long-chain-alcohol oxidase fao1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04918: 24500-26598
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001160_050 0.0 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
2 Hb_000836_420 0.0672624632 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
3 Hb_002374_030 0.0739294949 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
4 Hb_000878_090 0.0763574668 - - sucrose-phosphatase family protein [Populus trichocarpa]
5 Hb_189208_060 0.078020105 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
6 Hb_009907_020 0.0907488376 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
7 Hb_000152_410 0.1001305161 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
8 Hb_001660_080 0.1083980481 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
9 Hb_160653_010 0.1103841907 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
10 Hb_121540_010 0.1118010404 - - PREDICTED: UDP-glycosyltransferase 88A1-like [Jatropha curcas]
11 Hb_008406_070 0.1144118482 - - PREDICTED: probable protein phosphatase 2C 58 [Jatropha curcas]
12 Hb_011794_050 0.1146867644 - - transcription factor, putative [Ricinus communis]
13 Hb_000319_010 0.1156292514 - - hypothetical protein POPTR_0016s03600g [Populus trichocarpa]
14 Hb_003060_150 0.1170166145 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_001769_120 0.1179074311 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
16 Hb_000771_040 0.1182757476 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Jatropha curcas]
17 Hb_028486_010 0.1183314191 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
18 Hb_000071_090 0.120789349 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
19 Hb_000035_140 0.1210638422 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
20 Hb_000032_090 0.1246629081 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001160_050 Hb_001160_050 Hb_000836_420 Hb_000836_420 Hb_001160_050--Hb_000836_420 Hb_002374_030 Hb_002374_030 Hb_001160_050--Hb_002374_030 Hb_000878_090 Hb_000878_090 Hb_001160_050--Hb_000878_090 Hb_189208_060 Hb_189208_060 Hb_001160_050--Hb_189208_060 Hb_009907_020 Hb_009907_020 Hb_001160_050--Hb_009907_020 Hb_000152_410 Hb_000152_410 Hb_001160_050--Hb_000152_410 Hb_000836_420--Hb_189208_060 Hb_001660_080 Hb_001660_080 Hb_000836_420--Hb_001660_080 Hb_000836_420--Hb_002374_030 Hb_121540_010 Hb_121540_010 Hb_000836_420--Hb_121540_010 Hb_003078_070 Hb_003078_070 Hb_000836_420--Hb_003078_070 Hb_002374_030--Hb_189208_060 Hb_008406_070 Hb_008406_070 Hb_002374_030--Hb_008406_070 Hb_000071_090 Hb_000071_090 Hb_002374_030--Hb_000071_090 Hb_000032_090 Hb_000032_090 Hb_002374_030--Hb_000032_090 Hb_000878_090--Hb_009907_020 Hb_008749_010 Hb_008749_010 Hb_000878_090--Hb_008749_010 Hb_000878_090--Hb_002374_030 Hb_004040_010 Hb_004040_010 Hb_000878_090--Hb_004040_010 Hb_000878_090--Hb_000152_410 Hb_011794_050 Hb_011794_050 Hb_189208_060--Hb_011794_050 Hb_189208_060--Hb_001660_080 Hb_189208_060--Hb_000152_410 Hb_002311_500 Hb_002311_500 Hb_009907_020--Hb_002311_500 Hb_000771_040 Hb_000771_040 Hb_009907_020--Hb_000771_040 Hb_001769_120 Hb_001769_120 Hb_009907_020--Hb_001769_120 Hb_009907_020--Hb_008749_010 Hb_003029_010 Hb_003029_010 Hb_000152_410--Hb_003029_010 Hb_002596_090 Hb_002596_090 Hb_000152_410--Hb_002596_090 Hb_000152_410--Hb_001769_120 Hb_000152_410--Hb_000836_420 Hb_028487_040 Hb_028487_040 Hb_000152_410--Hb_028487_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.827871 1.25838 0.556819 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.109789 0.260442

CAGE analysis