Hb_000032_090

Information

Type -
Description -
Location Contig32: 65909-66421
Sequence    

Annotation

kegg
ID rcu:RCOM_1691280
description hypothetical protein
nr
ID XP_002509936.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCQ2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1691280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33696: 65726-66643
cDNA
(Sanger)
(ID:Location)		 006_M02.ab1: 65726-66482 , 009_A22.ab1: 65890-66641

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004393_030 0.077754265 - - CBL-interacting protein kinase 6 [Populus trichocarpa]
3 Hb_001254_020 0.0783134722 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
4 Hb_002374_030 0.0920961576 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
5 Hb_008810_030 0.0974170781 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
6 Hb_000985_140 0.0988578365 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
7 Hb_012799_040 0.0994142505 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
8 Hb_007007_030 0.1005471513 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000319_010 0.1053089166 - - hypothetical protein POPTR_0016s03600g [Populus trichocarpa]
10 Hb_021254_020 0.1071228931 - - calmodulin binding protein, putative [Ricinus communis]
11 Hb_000071_090 0.1083778416 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
12 Hb_000152_410 0.1088627869 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
13 Hb_189208_060 0.1136971256 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
14 Hb_003078_070 0.1141943317 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
15 Hb_000878_090 0.1152741427 - - sucrose-phosphatase family protein [Populus trichocarpa]
16 Hb_000054_140 0.1169915049 - - PREDICTED: MACPF domain-containing protein CAD1 [Jatropha curcas]
17 Hb_033187_020 0.1190502678 - - hypothetical protein CARUB_v10004250mg, partial [Capsella rubella]
18 Hb_001610_070 0.1207154592 - - hypothetical protein MIMGU_mgv1a022867mg [Erythranthe guttata]
19 Hb_000418_060 0.1207504544 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
20 Hb_000836_420 0.1207738442 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000032_090 Hb_000032_090 Hb_004393_030 Hb_004393_030 Hb_000032_090--Hb_004393_030 Hb_001254_020 Hb_001254_020 Hb_000032_090--Hb_001254_020 Hb_002374_030 Hb_002374_030 Hb_000032_090--Hb_002374_030 Hb_008810_030 Hb_008810_030 Hb_000032_090--Hb_008810_030 Hb_000985_140 Hb_000985_140 Hb_000032_090--Hb_000985_140 Hb_012799_040 Hb_012799_040 Hb_000032_090--Hb_012799_040 Hb_004393_030--Hb_008810_030 Hb_021254_020 Hb_021254_020 Hb_004393_030--Hb_021254_020 Hb_004393_030--Hb_000985_140 Hb_001660_130 Hb_001660_130 Hb_004393_030--Hb_001660_130 Hb_007007_030 Hb_007007_030 Hb_004393_030--Hb_007007_030 Hb_000418_060 Hb_000418_060 Hb_001254_020--Hb_000418_060 Hb_001254_020--Hb_004393_030 Hb_001254_020--Hb_007007_030 Hb_000071_090 Hb_000071_090 Hb_001254_020--Hb_000071_090 Hb_001610_070 Hb_001610_070 Hb_001254_020--Hb_001610_070 Hb_001160_050 Hb_001160_050 Hb_002374_030--Hb_001160_050 Hb_189208_060 Hb_189208_060 Hb_002374_030--Hb_189208_060 Hb_008406_070 Hb_008406_070 Hb_002374_030--Hb_008406_070 Hb_002374_030--Hb_000071_090 Hb_000836_420 Hb_000836_420 Hb_002374_030--Hb_000836_420 Hb_008810_030--Hb_021254_020 Hb_134022_010 Hb_134022_010 Hb_008810_030--Hb_134022_010 Hb_004899_360 Hb_004899_360 Hb_008810_030--Hb_004899_360 Hb_004109_240 Hb_004109_240 Hb_008810_030--Hb_004109_240 Hb_003078_070 Hb_003078_070 Hb_000985_140--Hb_003078_070 Hb_000985_140--Hb_021254_020 Hb_001247_160 Hb_001247_160 Hb_000985_140--Hb_001247_160 Hb_000985_140--Hb_000071_090 Hb_000656_260 Hb_000656_260 Hb_012799_040--Hb_000656_260 Hb_012799_040--Hb_004393_030 Hb_036492_020 Hb_036492_020 Hb_012799_040--Hb_036492_020 Hb_012799_040--Hb_001660_130 Hb_029584_110 Hb_029584_110 Hb_012799_040--Hb_029584_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.165152 85.4986 79.5232 57.2105 0.155318 0.296008
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.128715 0 0.688806 10.2338 35.5504

CAGE analysis