Hb_004899_360

Information

Type -
Description -
Location Contig4899: 292574-294549
Sequence    

Annotation

kegg
ID rcu:RCOM_0711010
description Serine/threonine-protein kinase PBS1, putative
nr
ID XP_002516246.1
description Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
swissprot
ID Q9M1L7
description Pollen receptor-like kinase 3 OS=Arabidopsis thaliana GN=PRK3 PE=1 SV=1
trembl
ID B9RR77
description Serine/threonine-protein kinase PBS1, putative OS=Ricinus communis GN=RCOM_0711010 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable inactive leucine-rich repeat receptor-like protein kinase at5g20690

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004899_360 0.0 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
2 Hb_008202_020 0.0616967457 - - receptor serine/threonine kinase, putative [Ricinus communis]
3 Hb_004109_240 0.0881715733 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
4 Hb_008810_030 0.0902820929 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
5 Hb_097007_020 0.0926770175 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
6 Hb_001619_140 0.0972650089 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
7 Hb_002010_020 0.0985612661 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 2-like [Jatropha curcas]
8 Hb_021254_020 0.101593525 - - calmodulin binding protein, putative [Ricinus communis]
9 Hb_035677_010 0.1089081362 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001104_270 0.1119285631 - - hypothetical protein POPTR_0007s13980g [Populus trichocarpa]
11 Hb_154466_010 0.1160311859 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
12 Hb_134022_010 0.1206482864 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
13 Hb_002471_190 0.1221224044 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
14 Hb_000571_030 0.1239602648 - - ammonium transporter, putative [Ricinus communis]
15 Hb_004393_030 0.1251706365 - - CBL-interacting protein kinase 6 [Populus trichocarpa]
16 Hb_013720_010 0.1261595725 - - Putative DNA repair RAD23-3 -like protein [Gossypium arboreum]
17 Hb_000087_200 0.1278959464 - - PREDICTED: uncharacterized protein LOC105641954 [Jatropha curcas]
18 Hb_000247_150 0.1289122645 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
19 Hb_000402_180 0.1299629608 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
20 Hb_029664_010 0.1312906078 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_004899_360 Hb_004899_360 Hb_008202_020 Hb_008202_020 Hb_004899_360--Hb_008202_020 Hb_004109_240 Hb_004109_240 Hb_004899_360--Hb_004109_240 Hb_008810_030 Hb_008810_030 Hb_004899_360--Hb_008810_030 Hb_097007_020 Hb_097007_020 Hb_004899_360--Hb_097007_020 Hb_001619_140 Hb_001619_140 Hb_004899_360--Hb_001619_140 Hb_002010_020 Hb_002010_020 Hb_004899_360--Hb_002010_020 Hb_008202_020--Hb_001619_140 Hb_008202_020--Hb_002010_020 Hb_008202_020--Hb_004109_240 Hb_154466_010 Hb_154466_010 Hb_008202_020--Hb_154466_010 Hb_121540_010 Hb_121540_010 Hb_008202_020--Hb_121540_010 Hb_021254_020 Hb_021254_020 Hb_004109_240--Hb_021254_020 Hb_000087_200 Hb_000087_200 Hb_004109_240--Hb_000087_200 Hb_028486_010 Hb_028486_010 Hb_004109_240--Hb_028486_010 Hb_004109_240--Hb_121540_010 Hb_004393_030 Hb_004393_030 Hb_008810_030--Hb_004393_030 Hb_008810_030--Hb_021254_020 Hb_134022_010 Hb_134022_010 Hb_008810_030--Hb_134022_010 Hb_000032_090 Hb_000032_090 Hb_008810_030--Hb_000032_090 Hb_008810_030--Hb_004109_240 Hb_035677_010 Hb_035677_010 Hb_097007_020--Hb_035677_010 Hb_000247_150 Hb_000247_150 Hb_097007_020--Hb_000247_150 Hb_012496_010 Hb_012496_010 Hb_097007_020--Hb_012496_010 Hb_006907_020 Hb_006907_020 Hb_097007_020--Hb_006907_020 Hb_000571_030 Hb_000571_030 Hb_097007_020--Hb_000571_030 Hb_001619_140--Hb_154466_010 Hb_120011_010 Hb_120011_010 Hb_001619_140--Hb_120011_010 Hb_001619_140--Hb_000571_030 Hb_007858_020 Hb_007858_020 Hb_001619_140--Hb_007858_020 Hb_002010_020--Hb_154466_010 Hb_002471_190 Hb_002471_190 Hb_002010_020--Hb_002471_190 Hb_002391_020 Hb_002391_020 Hb_002010_020--Hb_002391_020 Hb_002010_020--Hb_001619_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.497208 0.276677 0.119208 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.030165 0.0799309

CAGE analysis