Hb_035677_010

Information

Type -
Description -
Location Contig35677: 2716-5151
Sequence    

Annotation

kegg
ID rcu:RCOM_0664340
description hypothetical protein
nr
ID XP_002533313.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T4Z4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0664340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_035677_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000247_150 0.0598842774 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
3 Hb_012496_010 0.0742845999 - - kinase, putative [Ricinus communis]
4 Hb_097007_020 0.0819525103 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
5 Hb_000571_030 0.1022336982 - - ammonium transporter, putative [Ricinus communis]
6 Hb_013720_010 0.1049831034 - - Putative DNA repair RAD23-3 -like protein [Gossypium arboreum]
7 Hb_004899_360 0.1089081362 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
8 Hb_001104_270 0.112762456 - - hypothetical protein POPTR_0007s13980g [Populus trichocarpa]
9 Hb_006907_020 0.1198113284 - - 1-amino-cyclopropane-1-carboxylic acid oxidase 3 [Manihot esculenta]
10 Hb_113396_020 0.1207454576 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
11 Hb_039650_030 0.1225247681 - - hypothetical protein RCOM_2128750 [Ricinus communis]
12 Hb_000422_050 0.1275064896 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
13 Hb_000656_350 0.1297673522 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
14 Hb_000331_710 0.1303891736 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
15 Hb_006873_030 0.130605074 - - receptor serine/threonine kinase, putative [Ricinus communis]
16 Hb_003811_030 0.1318010009 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
17 Hb_000060_100 0.1328257766 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
18 Hb_009476_010 0.1353750043 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
19 Hb_002849_030 0.1365037049 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
20 Hb_009189_010 0.1369940753 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]

Gene co-expression network

sample Hb_035677_010 Hb_035677_010 Hb_000247_150 Hb_000247_150 Hb_035677_010--Hb_000247_150 Hb_012496_010 Hb_012496_010 Hb_035677_010--Hb_012496_010 Hb_097007_020 Hb_097007_020 Hb_035677_010--Hb_097007_020 Hb_000571_030 Hb_000571_030 Hb_035677_010--Hb_000571_030 Hb_013720_010 Hb_013720_010 Hb_035677_010--Hb_013720_010 Hb_004899_360 Hb_004899_360 Hb_035677_010--Hb_004899_360 Hb_000247_150--Hb_013720_010 Hb_000331_710 Hb_000331_710 Hb_000247_150--Hb_000331_710 Hb_000247_150--Hb_097007_020 Hb_039650_030 Hb_039650_030 Hb_000247_150--Hb_039650_030 Hb_000247_150--Hb_012496_010 Hb_113396_020 Hb_113396_020 Hb_012496_010--Hb_113396_020 Hb_000836_310 Hb_000836_310 Hb_012496_010--Hb_000836_310 Hb_000127_220 Hb_000127_220 Hb_012496_010--Hb_000127_220 Hb_006907_020 Hb_006907_020 Hb_012496_010--Hb_006907_020 Hb_000422_050 Hb_000422_050 Hb_012496_010--Hb_000422_050 Hb_097007_020--Hb_004899_360 Hb_097007_020--Hb_012496_010 Hb_097007_020--Hb_006907_020 Hb_097007_020--Hb_000571_030 Hb_000656_350 Hb_000656_350 Hb_000571_030--Hb_000656_350 Hb_001619_140 Hb_001619_140 Hb_000571_030--Hb_001619_140 Hb_000032_150 Hb_000032_150 Hb_000571_030--Hb_000032_150 Hb_001257_040 Hb_001257_040 Hb_000571_030--Hb_001257_040 Hb_007858_020 Hb_007858_020 Hb_000571_030--Hb_007858_020 Hb_029622_080 Hb_029622_080 Hb_000571_030--Hb_029622_080 Hb_013720_010--Hb_000331_710 Hb_006698_020 Hb_006698_020 Hb_013720_010--Hb_006698_020 Hb_000027_060 Hb_000027_060 Hb_013720_010--Hb_000027_060 Hb_001104_270 Hb_001104_270 Hb_013720_010--Hb_001104_270 Hb_008667_030 Hb_008667_030 Hb_013720_010--Hb_008667_030 Hb_008202_020 Hb_008202_020 Hb_004899_360--Hb_008202_020 Hb_004109_240 Hb_004109_240 Hb_004899_360--Hb_004109_240 Hb_008810_030 Hb_008810_030 Hb_004899_360--Hb_008810_030 Hb_004899_360--Hb_001619_140 Hb_002010_020 Hb_002010_020 Hb_004899_360--Hb_002010_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.2816 0.711857 0.365538 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0680528 0.280153

CAGE analysis