Hb_013720_010

Information

Type -
Description -
Location Contig13720: 5366-6616
Sequence    

Annotation

kegg
ID gmx:100809066
description putative DNA repair protein RAD23-3-like
nr
ID KHG17760.1
description Putative DNA repair RAD23-3 -like protein [Gossypium arboreum]
swissprot
ID Q84L30
description Ubiquitin receptor RAD23d OS=Arabidopsis thaliana GN=RAD23D PE=1 SV=2
trembl
ID A0A0B0NY76
description Putative DNA repair RAD23-3-like protein OS=Gossypium arboreum GN=F383_23407 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013720_010 0.0 - - Putative DNA repair RAD23-3 -like protein [Gossypium arboreum]
2 Hb_000331_710 0.0704717085 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
3 Hb_006698_020 0.0818299305 - - hypothetical protein JCGZ_04585 [Jatropha curcas]
4 Hb_000247_150 0.083009368 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
5 Hb_000027_060 0.085449425 - - hypothetical protein POPTR_0004s07470g [Populus trichocarpa]
6 Hb_001104_270 0.087202572 - - hypothetical protein POPTR_0007s13980g [Populus trichocarpa]
7 Hb_008667_030 0.1046558928 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
8 Hb_035677_010 0.1049831034 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003914_050 0.1075242863 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
10 Hb_004880_100 0.116482178 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300-like [Glycine max]
11 Hb_000000_070 0.1210382905 - - allene oxide synthase [Hevea brasiliensis]
12 Hb_000705_130 0.1212651881 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008040_060 0.121555676 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
14 Hb_002529_080 0.1255531186 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase [Jatropha curcas]
15 Hb_004899_360 0.1261595725 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
16 Hb_004945_050 0.129206043 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
17 Hb_001534_150 0.1366166648 - - PREDICTED: uncharacterized permease C29B12.14c [Jatropha curcas]
18 Hb_097007_020 0.1398633158 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
19 Hb_000649_160 0.1409364341 - - PREDICTED: nudix hydrolase 18, mitochondrial [Jatropha curcas]
20 Hb_008550_030 0.1425813838 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]

Gene co-expression network

sample Hb_013720_010 Hb_013720_010 Hb_000331_710 Hb_000331_710 Hb_013720_010--Hb_000331_710 Hb_006698_020 Hb_006698_020 Hb_013720_010--Hb_006698_020 Hb_000247_150 Hb_000247_150 Hb_013720_010--Hb_000247_150 Hb_000027_060 Hb_000027_060 Hb_013720_010--Hb_000027_060 Hb_001104_270 Hb_001104_270 Hb_013720_010--Hb_001104_270 Hb_008667_030 Hb_008667_030 Hb_013720_010--Hb_008667_030 Hb_000331_710--Hb_000027_060 Hb_000331_710--Hb_000247_150 Hb_000705_130 Hb_000705_130 Hb_000331_710--Hb_000705_130 Hb_004712_140 Hb_004712_140 Hb_000331_710--Hb_004712_140 Hb_000331_710--Hb_006698_020 Hb_006698_020--Hb_008667_030 Hb_000000_070 Hb_000000_070 Hb_006698_020--Hb_000000_070 Hb_029866_050 Hb_029866_050 Hb_006698_020--Hb_029866_050 Hb_002529_080 Hb_002529_080 Hb_006698_020--Hb_002529_080 Hb_035677_010 Hb_035677_010 Hb_000247_150--Hb_035677_010 Hb_097007_020 Hb_097007_020 Hb_000247_150--Hb_097007_020 Hb_039650_030 Hb_039650_030 Hb_000247_150--Hb_039650_030 Hb_012496_010 Hb_012496_010 Hb_000247_150--Hb_012496_010 Hb_001534_150 Hb_001534_150 Hb_000027_060--Hb_001534_150 Hb_000027_060--Hb_000705_130 Hb_008040_060 Hb_008040_060 Hb_000027_060--Hb_008040_060 Hb_003914_050 Hb_003914_050 Hb_000027_060--Hb_003914_050 Hb_004112_050 Hb_004112_050 Hb_001104_270--Hb_004112_050 Hb_000060_100 Hb_000060_100 Hb_001104_270--Hb_000060_100 Hb_002218_080 Hb_002218_080 Hb_001104_270--Hb_002218_080 Hb_004899_360 Hb_004899_360 Hb_001104_270--Hb_004899_360 Hb_001104_270--Hb_035677_010 Hb_008667_030--Hb_002529_080 Hb_117127_010 Hb_117127_010 Hb_008667_030--Hb_117127_010 Hb_000098_250 Hb_000098_250 Hb_008667_030--Hb_000098_250 Hb_000338_030 Hb_000338_030 Hb_008667_030--Hb_000338_030 Hb_008667_030--Hb_000000_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 16.7809 4.89306 3.58596 0 0.037103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.74173 2.36326

CAGE analysis