Hb_003914_050

Information

Type -
Description -
Location Contig3914: 117612-119000
Sequence    

Annotation

kegg
ID egr:104445137
description uncharacterized LOC104445137
nr
ID XP_010057259.1
description PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059C5H7
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E02343 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39214: 118481-118858
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003914_050 0.0 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
2 Hb_002529_080 0.0838399252 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase [Jatropha curcas]
3 Hb_000094_010 0.0876151366 - - lrr receptor protein kinase, putative [Ricinus communis]
4 Hb_008040_060 0.0955264443 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
5 Hb_008667_030 0.0996941879 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
6 Hb_012098_180 0.1002732828 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
7 Hb_000027_060 0.1022979295 - - hypothetical protein POPTR_0004s07470g [Populus trichocarpa]
8 Hb_000522_130 0.1026086387 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
9 Hb_013720_010 0.1075242863 - - Putative DNA repair RAD23-3 -like protein [Gossypium arboreum]
10 Hb_006698_020 0.1078855325 - - hypothetical protein JCGZ_04585 [Jatropha curcas]
11 Hb_000331_710 0.110442291 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_000705_130 0.1104707867 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002890_320 0.1185009147 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
14 Hb_000098_250 0.1225272555 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]
15 Hb_073119_010 0.123318737 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
16 Hb_000000_070 0.126797956 - - allene oxide synthase [Hevea brasiliensis]
17 Hb_029866_050 0.1282367091 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
18 Hb_010921_060 0.1292526244 - - ATP binding protein, putative [Ricinus communis]
19 Hb_000359_080 0.1292949544 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
20 Hb_001515_030 0.1303354096 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003914_050 Hb_003914_050 Hb_002529_080 Hb_002529_080 Hb_003914_050--Hb_002529_080 Hb_000094_010 Hb_000094_010 Hb_003914_050--Hb_000094_010 Hb_008040_060 Hb_008040_060 Hb_003914_050--Hb_008040_060 Hb_008667_030 Hb_008667_030 Hb_003914_050--Hb_008667_030 Hb_012098_180 Hb_012098_180 Hb_003914_050--Hb_012098_180 Hb_000027_060 Hb_000027_060 Hb_003914_050--Hb_000027_060 Hb_002529_080--Hb_008667_030 Hb_002529_080--Hb_000094_010 Hb_000000_070 Hb_000000_070 Hb_002529_080--Hb_000000_070 Hb_002529_080--Hb_008040_060 Hb_000098_250 Hb_000098_250 Hb_002529_080--Hb_000098_250 Hb_000116_290 Hb_000116_290 Hb_000094_010--Hb_000116_290 Hb_000094_010--Hb_008040_060 Hb_000976_340 Hb_000976_340 Hb_000094_010--Hb_000976_340 Hb_000522_130 Hb_000522_130 Hb_000094_010--Hb_000522_130 Hb_001248_170 Hb_001248_170 Hb_008040_060--Hb_001248_170 Hb_008040_060--Hb_000027_060 Hb_008040_060--Hb_000000_070 Hb_008040_060--Hb_008667_030 Hb_117127_010 Hb_117127_010 Hb_008667_030--Hb_117127_010 Hb_008667_030--Hb_000098_250 Hb_006698_020 Hb_006698_020 Hb_008667_030--Hb_006698_020 Hb_000338_030 Hb_000338_030 Hb_008667_030--Hb_000338_030 Hb_008667_030--Hb_000000_070 Hb_001538_050 Hb_001538_050 Hb_012098_180--Hb_001538_050 Hb_000237_070 Hb_000237_070 Hb_012098_180--Hb_000237_070 Hb_012098_180--Hb_000522_130 Hb_002890_320 Hb_002890_320 Hb_012098_180--Hb_002890_320 Hb_001123_170 Hb_001123_170 Hb_012098_180--Hb_001123_170 Hb_001534_150 Hb_001534_150 Hb_000027_060--Hb_001534_150 Hb_000331_710 Hb_000331_710 Hb_000027_060--Hb_000331_710 Hb_013720_010 Hb_013720_010 Hb_000027_060--Hb_013720_010 Hb_000705_130 Hb_000705_130 Hb_000027_060--Hb_000705_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0149728 19.2778 6.01895 4.80117 0 0.0304301
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.102412 0.161133 0.1006 3.98142 3.63959

CAGE analysis