Hb_002890_320

Information

Type -
Description -
Location Contig2890: 365928-370142
Sequence    

Annotation

kegg
ID pop:POPTR_0017s08030g
description POPTRDRAFT_1104923; hypothetical protein
nr
ID XP_012069136.1
description PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9IJF8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08030g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30225: 366031-370178 , PASA_asmbl_30227: 368716-368973
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_320 0.0 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
2 Hb_004837_110 0.0657093002 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
3 Hb_007102_010 0.0839323359 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
4 Hb_005569_030 0.0892787192 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 isoform X1 [Jatropha curcas]
5 Hb_000313_100 0.0993156306 rubber biosynthesis Gene Name: CPT4 PREDICTED: rubber cis-polyprenyltransferase HRT2 [Jatropha curcas]
6 Hb_012098_180 0.1089721903 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
7 Hb_000237_070 0.1136158815 - - Purple acid phosphatase precursor, putative [Ricinus communis]
8 Hb_002783_140 0.1143806601 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
9 Hb_001821_050 0.1149902323 - - hypothetical protein CICLE_v10032084mg [Citrus clementina]
10 Hb_001515_030 0.1157119917 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_175670_010 0.1172827503 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
12 Hb_007416_170 0.1175752193 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
13 Hb_003914_050 0.1185009147 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
14 Hb_000027_060 0.1210112267 - - hypothetical protein POPTR_0004s07470g [Populus trichocarpa]
15 Hb_003387_080 0.1210588435 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_008040_060 0.1211681448 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
17 Hb_033312_090 0.1218862874 - - PREDICTED: HMG-Y-related protein A-like isoform X1 [Jatropha curcas]
18 Hb_005867_030 0.1247204655 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
19 Hb_004880_100 0.1270655065 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300-like [Glycine max]
20 Hb_167272_010 0.1279051609 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]

Gene co-expression network

sample Hb_002890_320 Hb_002890_320 Hb_004837_110 Hb_004837_110 Hb_002890_320--Hb_004837_110 Hb_007102_010 Hb_007102_010 Hb_002890_320--Hb_007102_010 Hb_005569_030 Hb_005569_030 Hb_002890_320--Hb_005569_030 Hb_000313_100 Hb_000313_100 Hb_002890_320--Hb_000313_100 Hb_012098_180 Hb_012098_180 Hb_002890_320--Hb_012098_180 Hb_000237_070 Hb_000237_070 Hb_002890_320--Hb_000237_070 Hb_004837_110--Hb_007102_010 Hb_000054_140 Hb_000054_140 Hb_004837_110--Hb_000054_140 Hb_001821_050 Hb_001821_050 Hb_004837_110--Hb_001821_050 Hb_028928_020 Hb_028928_020 Hb_004837_110--Hb_028928_020 Hb_002375_080 Hb_002375_080 Hb_004837_110--Hb_002375_080 Hb_007102_010--Hb_001821_050 Hb_007102_010--Hb_002375_080 Hb_004724_300 Hb_004724_300 Hb_007102_010--Hb_004724_300 Hb_004112_050 Hb_004112_050 Hb_007102_010--Hb_004112_050 Hb_005569_030--Hb_000313_100 Hb_033153_040 Hb_033153_040 Hb_005569_030--Hb_033153_040 Hb_175670_010 Hb_175670_010 Hb_005569_030--Hb_175670_010 Hb_001515_030 Hb_001515_030 Hb_005569_030--Hb_001515_030 Hb_167272_010 Hb_167272_010 Hb_005569_030--Hb_167272_010 Hb_000313_100--Hb_175670_010 Hb_000313_100--Hb_033153_040 Hb_004324_220 Hb_004324_220 Hb_000313_100--Hb_004324_220 Hb_000313_100--Hb_001821_050 Hb_001538_050 Hb_001538_050 Hb_012098_180--Hb_001538_050 Hb_012098_180--Hb_000237_070 Hb_000522_130 Hb_000522_130 Hb_012098_180--Hb_000522_130 Hb_003914_050 Hb_003914_050 Hb_012098_180--Hb_003914_050 Hb_001123_170 Hb_001123_170 Hb_012098_180--Hb_001123_170 Hb_031862_020 Hb_031862_020 Hb_000237_070--Hb_031862_020 Hb_000382_030 Hb_000382_030 Hb_000237_070--Hb_000382_030 Hb_000237_070--Hb_167272_010 Hb_005867_030 Hb_005867_030 Hb_000237_070--Hb_005867_030 Hb_000318_050 Hb_000318_050 Hb_000237_070--Hb_000318_050 Hb_001377_130 Hb_001377_130 Hb_000237_070--Hb_001377_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 23.439 11.3963 7.16832 0 0.0160249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0833004 0 0 4.7923 8.39714

CAGE analysis