Hb_007102_010

Information

Type -
Description -
Location Contig7102: 56828-61114
Sequence    

Annotation

kegg
ID tcc:TCM_015612
description UDP-Glycosyltransferase superfamily protein isoform 1
nr
ID KHG03349.1
description Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
swissprot
ID Q43784
description Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Manihot esculenta GN=WAXY PE=2 SV=1
trembl
ID A0A0B0MV47
description Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Gossypium arboreum GN=F383_28167 PE=4 SV=1
Gene Ontology
ID GO:0009058
description granule-bound starch synthase chloroplastic amyloplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55274: 56796-60875
cDNA
(Sanger)
(ID:Location)		 001_E08.ab1: 56805-58456 , 024_H18.ab1: 56796-57988

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007102_010 0.0 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
2 Hb_004837_110 0.0615833644 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
3 Hb_001821_050 0.0768179987 - - hypothetical protein CICLE_v10032084mg [Citrus clementina]
4 Hb_002890_320 0.0839323359 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
5 Hb_002375_080 0.0884552595 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004724_300 0.0907215317 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
7 Hb_004112_050 0.0944057952 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
8 Hb_004393_030 0.095469667 - - CBL-interacting protein kinase 6 [Populus trichocarpa]
9 Hb_001677_120 0.0985250262 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
10 Hb_002010_080 0.1036368887 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]
11 Hb_006573_280 0.1072093226 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
12 Hb_007007_090 0.1103628862 - - phospholipase d beta, putative [Ricinus communis]
13 Hb_134022_010 0.1141587113 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
14 Hb_000054_140 0.11460192 - - PREDICTED: MACPF domain-containing protein CAD1 [Jatropha curcas]
15 Hb_008810_030 0.1153014839 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
16 Hb_012799_040 0.1187195849 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
17 Hb_000027_060 0.1217198573 - - hypothetical protein POPTR_0004s07470g [Populus trichocarpa]
18 Hb_000313_100 0.122412927 rubber biosynthesis Gene Name: CPT4 PREDICTED: rubber cis-polyprenyltransferase HRT2 [Jatropha curcas]
19 Hb_007007_030 0.1254030448 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004945_050 0.1259072156 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]

Gene co-expression network

sample Hb_007102_010 Hb_007102_010 Hb_004837_110 Hb_004837_110 Hb_007102_010--Hb_004837_110 Hb_001821_050 Hb_001821_050 Hb_007102_010--Hb_001821_050 Hb_002890_320 Hb_002890_320 Hb_007102_010--Hb_002890_320 Hb_002375_080 Hb_002375_080 Hb_007102_010--Hb_002375_080 Hb_004724_300 Hb_004724_300 Hb_007102_010--Hb_004724_300 Hb_004112_050 Hb_004112_050 Hb_007102_010--Hb_004112_050 Hb_004837_110--Hb_002890_320 Hb_000054_140 Hb_000054_140 Hb_004837_110--Hb_000054_140 Hb_004837_110--Hb_001821_050 Hb_028928_020 Hb_028928_020 Hb_004837_110--Hb_028928_020 Hb_004837_110--Hb_002375_080 Hb_001821_050--Hb_004724_300 Hb_001677_120 Hb_001677_120 Hb_001821_050--Hb_001677_120 Hb_134022_010 Hb_134022_010 Hb_001821_050--Hb_134022_010 Hb_001821_050--Hb_002375_080 Hb_005569_030 Hb_005569_030 Hb_002890_320--Hb_005569_030 Hb_000313_100 Hb_000313_100 Hb_002890_320--Hb_000313_100 Hb_012098_180 Hb_012098_180 Hb_002890_320--Hb_012098_180 Hb_000237_070 Hb_000237_070 Hb_002890_320--Hb_000237_070 Hb_007007_090 Hb_007007_090 Hb_002375_080--Hb_007007_090 Hb_002375_080--Hb_001677_120 Hb_002097_130 Hb_002097_130 Hb_002375_080--Hb_002097_130 Hb_004724_300--Hb_134022_010 Hb_002725_080 Hb_002725_080 Hb_004724_300--Hb_002725_080 Hb_004724_300--Hb_004112_050 Hb_004724_300--Hb_001677_120 Hb_001310_080 Hb_001310_080 Hb_004112_050--Hb_001310_080 Hb_002218_080 Hb_002218_080 Hb_004112_050--Hb_002218_080 Hb_007007_030 Hb_007007_030 Hb_004112_050--Hb_007007_030 Hb_113396_010 Hb_113396_010 Hb_004112_050--Hb_113396_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.90326 465.459 216.451 183.135 1.33478 0.284701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.638558 0.125618 0.0798191 60.1721 160.908

CAGE analysis