Hb_005569_030

Information

Type -
Description -
Location Contig5569: 49050-71127
Sequence    

Annotation

kegg
ID rcu:RCOM_0514740
description ATP binding protein, putative (EC:1.3.1.74 2.7.10.2)
nr
ID XP_012074000.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 isoform X1 [Jatropha curcas]
swissprot
ID C0LGH2
description Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=2 SV=2
trembl
ID A0A067KK01
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08587 PE=4 SV=1
Gene Ontology
ID GO:0004715
description probable lrr receptor-like serine threonine-protein kinase at1g56140 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48589: 49161-49275 , PASA_asmbl_48591: 53698-61080 , PASA_asmbl_48592: 60703-71119 , PASA_asmbl_48593: 67287-67584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005569_030 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 isoform X1 [Jatropha curcas]
2 Hb_000313_100 0.0650992806 rubber biosynthesis Gene Name: CPT4 PREDICTED: rubber cis-polyprenyltransferase HRT2 [Jatropha curcas]
3 Hb_033153_040 0.0711193023 - - o-methyltransferase, putative [Ricinus communis]
4 Hb_175670_010 0.0774857874 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
5 Hb_002890_320 0.0892787192 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
6 Hb_001515_030 0.0914762826 - - UDP-glucosyltransferase, putative [Ricinus communis]
7 Hb_167272_010 0.1016724392 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
8 Hb_006269_010 0.1055618359 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
9 Hb_004837_110 0.1062914026 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
10 Hb_000412_090 0.1077549076 - - receptor serine/threonine kinase, putative [Ricinus communis]
11 Hb_033312_090 0.1079776267 - - PREDICTED: HMG-Y-related protein A-like isoform X1 [Jatropha curcas]
12 Hb_007420_010 0.1086207496 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X2 [Jatropha curcas]
13 Hb_003562_040 0.1119651133 - - PREDICTED: septum-promoting GTP-binding protein 1-like [Jatropha curcas]
14 Hb_002783_140 0.1150666912 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
15 Hb_114310_050 0.116784055 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
16 Hb_002849_120 0.1188772 - - ferric reductase oxidase [Manihot esculenta]
17 Hb_001153_090 0.1214386969 - - PREDICTED: protein FAM63A [Jatropha curcas]
18 Hb_003387_080 0.1232407278 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_007007_090 0.1267152529 - - phospholipase d beta, putative [Ricinus communis]
20 Hb_009803_030 0.1272743132 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]

Gene co-expression network

sample Hb_005569_030 Hb_005569_030 Hb_000313_100 Hb_000313_100 Hb_005569_030--Hb_000313_100 Hb_033153_040 Hb_033153_040 Hb_005569_030--Hb_033153_040 Hb_175670_010 Hb_175670_010 Hb_005569_030--Hb_175670_010 Hb_002890_320 Hb_002890_320 Hb_005569_030--Hb_002890_320 Hb_001515_030 Hb_001515_030 Hb_005569_030--Hb_001515_030 Hb_167272_010 Hb_167272_010 Hb_005569_030--Hb_167272_010 Hb_000313_100--Hb_175670_010 Hb_000313_100--Hb_033153_040 Hb_004324_220 Hb_004324_220 Hb_000313_100--Hb_004324_220 Hb_000313_100--Hb_002890_320 Hb_001821_050 Hb_001821_050 Hb_000313_100--Hb_001821_050 Hb_002849_120 Hb_002849_120 Hb_033153_040--Hb_002849_120 Hb_000680_020 Hb_000680_020 Hb_033153_040--Hb_000680_020 Hb_003077_140 Hb_003077_140 Hb_033153_040--Hb_003077_140 Hb_001153_090 Hb_001153_090 Hb_033153_040--Hb_001153_090 Hb_175670_010--Hb_004324_220 Hb_003562_040 Hb_003562_040 Hb_175670_010--Hb_003562_040 Hb_044624_010 Hb_044624_010 Hb_175670_010--Hb_044624_010 Hb_001046_040 Hb_001046_040 Hb_175670_010--Hb_001046_040 Hb_004837_110 Hb_004837_110 Hb_002890_320--Hb_004837_110 Hb_007102_010 Hb_007102_010 Hb_002890_320--Hb_007102_010 Hb_012098_180 Hb_012098_180 Hb_002890_320--Hb_012098_180 Hb_000237_070 Hb_000237_070 Hb_002890_320--Hb_000237_070 Hb_001515_030--Hb_167272_010 Hb_009803_030 Hb_009803_030 Hb_001515_030--Hb_009803_030 Hb_007420_010 Hb_007420_010 Hb_001515_030--Hb_007420_010 Hb_114310_050 Hb_114310_050 Hb_001515_030--Hb_114310_050 Hb_008040_060 Hb_008040_060 Hb_001515_030--Hb_008040_060 Hb_167272_010--Hb_007420_010 Hb_031862_020 Hb_031862_020 Hb_167272_010--Hb_031862_020 Hb_167272_010--Hb_000237_070 Hb_167272_010--Hb_009803_030 Hb_000085_220 Hb_000085_220 Hb_167272_010--Hb_000085_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0170216 23.4011 9.68393 7.45716 0.00530937 0.0153963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0101203 0.0193941 6.99202 12.1805

CAGE analysis