Hb_000085_220

Information

Type -
Description -
Location Contig85: 171357-175519
Sequence    

Annotation

kegg
ID rcu:RCOM_0632330
description hypothetical protein
nr
ID XP_002519672.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S103
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0632330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_220 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004166_020 0.0682948427 - - -
3 Hb_014361_020 0.0686402165 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
4 Hb_000092_030 0.0795099655 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
5 Hb_167272_010 0.0859574199 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
6 Hb_031862_020 0.0882735774 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
7 Hb_006269_010 0.0910805793 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
8 Hb_000382_030 0.092419948 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
9 Hb_007894_030 0.0939483113 - - calcium-dependent protein kinase, putative [Ricinus communis]
10 Hb_000497_100 0.0950717362 - - respiratory burst oxidase D [Manihot esculenta]
11 Hb_020285_010 0.0968344054 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]
12 Hb_010417_100 0.099390189 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
13 Hb_007420_020 0.1026468373 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_001369_070 0.1031809887 - - unnamed protein product [Vitis vinifera]
15 Hb_000237_070 0.1050653372 - - Purple acid phosphatase precursor, putative [Ricinus communis]
16 Hb_000501_040 0.1068684162 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000946_050 0.1070776912 - - cytochrome P450, putative [Ricinus communis]
18 Hb_114310_050 0.1123134015 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
19 Hb_023344_130 0.1127402482 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
20 Hb_001377_130 0.1142354945 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000085_220 Hb_000085_220 Hb_004166_020 Hb_004166_020 Hb_000085_220--Hb_004166_020 Hb_014361_020 Hb_014361_020 Hb_000085_220--Hb_014361_020 Hb_000092_030 Hb_000092_030 Hb_000085_220--Hb_000092_030 Hb_167272_010 Hb_167272_010 Hb_000085_220--Hb_167272_010 Hb_031862_020 Hb_031862_020 Hb_000085_220--Hb_031862_020 Hb_006269_010 Hb_006269_010 Hb_000085_220--Hb_006269_010 Hb_004166_020--Hb_014361_020 Hb_174101_010 Hb_174101_010 Hb_004166_020--Hb_174101_010 Hb_004166_020--Hb_000092_030 Hb_004166_020--Hb_006269_010 Hb_000497_100 Hb_000497_100 Hb_004166_020--Hb_000497_100 Hb_014361_020--Hb_167272_010 Hb_014361_020--Hb_006269_010 Hb_014361_020--Hb_174101_010 Hb_014361_020--Hb_000497_100 Hb_000946_050 Hb_000946_050 Hb_000092_030--Hb_000946_050 Hb_001544_070 Hb_001544_070 Hb_000092_030--Hb_001544_070 Hb_004122_060 Hb_004122_060 Hb_000092_030--Hb_004122_060 Hb_000092_030--Hb_006269_010 Hb_001515_030 Hb_001515_030 Hb_167272_010--Hb_001515_030 Hb_007420_010 Hb_007420_010 Hb_167272_010--Hb_007420_010 Hb_167272_010--Hb_031862_020 Hb_000237_070 Hb_000237_070 Hb_167272_010--Hb_000237_070 Hb_009803_030 Hb_009803_030 Hb_167272_010--Hb_009803_030 Hb_031862_020--Hb_000237_070 Hb_000501_040 Hb_000501_040 Hb_031862_020--Hb_000501_040 Hb_000382_030 Hb_000382_030 Hb_031862_020--Hb_000382_030 Hb_031862_020--Hb_007420_010 Hb_001153_090 Hb_001153_090 Hb_006269_010--Hb_001153_090 Hb_001174_030 Hb_001174_030 Hb_006269_010--Hb_001174_030 Hb_000477_110 Hb_000477_110 Hb_006269_010--Hb_000477_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.114055 0.0692534 0.0695533 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0835895 0.0488016

CAGE analysis