Hb_001153_090

Information

Type -
Description -
Location Contig1153: 45559-53091
Sequence    

Annotation

kegg
ID rcu:RCOM_1682960
description hypothetical protein
nr
ID XP_012087040.1
description PREDICTED: protein FAM63A [Jatropha curcas]
swissprot
ID Q5BJQ2
description Protein FAM63A OS=Rattus norvegicus GN=Fam63a PE=2 SV=1
trembl
ID A0A067JNT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20698 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04603: 45422-53067 , PASA_asmbl_04604: 47942-48144 , PASA_asmbl_04605: 52932-53261
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001153_090 0.0 - - PREDICTED: protein FAM63A [Jatropha curcas]
2 Hb_006269_010 0.0735080648 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
3 Hb_002849_120 0.0752207693 - - ferric reductase oxidase [Manihot esculenta]
4 Hb_007747_100 0.0821638986 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]
5 Hb_023344_130 0.0834056266 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
6 Hb_001160_020 0.0881792844 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
7 Hb_003077_140 0.0882648715 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
8 Hb_001956_080 0.0913664183 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
9 Hb_001174_030 0.0918796756 - - unnamed protein product [Vitis vinifera]
10 Hb_000477_110 0.0928130845 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
11 Hb_033153_040 0.0956256061 - - o-methyltransferase, putative [Ricinus communis]
12 Hb_005488_030 0.098685543 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]
13 Hb_114310_050 0.1001363332 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
14 Hb_003849_030 0.1012481208 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
15 Hb_006483_090 0.1032179003 - - PREDICTED: uncharacterized protein LOC105639979 [Jatropha curcas]
16 Hb_000614_190 0.1034367185 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
17 Hb_010880_010 0.1056193949 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
18 Hb_001706_020 0.1074477301 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
19 Hb_007420_020 0.1083675662 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
20 Hb_000025_590 0.1093860068 - - PREDICTED: cytochrome P450 94A1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001153_090 Hb_001153_090 Hb_006269_010 Hb_006269_010 Hb_001153_090--Hb_006269_010 Hb_002849_120 Hb_002849_120 Hb_001153_090--Hb_002849_120 Hb_007747_100 Hb_007747_100 Hb_001153_090--Hb_007747_100 Hb_023344_130 Hb_023344_130 Hb_001153_090--Hb_023344_130 Hb_001160_020 Hb_001160_020 Hb_001153_090--Hb_001160_020 Hb_003077_140 Hb_003077_140 Hb_001153_090--Hb_003077_140 Hb_001174_030 Hb_001174_030 Hb_006269_010--Hb_001174_030 Hb_000477_110 Hb_000477_110 Hb_006269_010--Hb_000477_110 Hb_000085_220 Hb_000085_220 Hb_006269_010--Hb_000085_220 Hb_014361_020 Hb_014361_020 Hb_006269_010--Hb_014361_020 Hb_004166_020 Hb_004166_020 Hb_006269_010--Hb_004166_020 Hb_033153_040 Hb_033153_040 Hb_002849_120--Hb_033153_040 Hb_003849_030 Hb_003849_030 Hb_002849_120--Hb_003849_030 Hb_000680_020 Hb_000680_020 Hb_002849_120--Hb_000680_020 Hb_002849_120--Hb_001160_020 Hb_127661_010 Hb_127661_010 Hb_002849_120--Hb_127661_010 Hb_007747_100--Hb_001160_020 Hb_005488_030 Hb_005488_030 Hb_007747_100--Hb_005488_030 Hb_007747_100--Hb_006269_010 Hb_007747_100--Hb_002849_120 Hb_001956_080 Hb_001956_080 Hb_007747_100--Hb_001956_080 Hb_006788_100 Hb_006788_100 Hb_023344_130--Hb_006788_100 Hb_023344_130--Hb_001160_020 Hb_002078_240 Hb_002078_240 Hb_023344_130--Hb_002078_240 Hb_023344_130--Hb_001956_080 Hb_000501_040 Hb_000501_040 Hb_023344_130--Hb_000501_040 Hb_001160_020--Hb_003849_030 Hb_000318_050 Hb_000318_050 Hb_001160_020--Hb_000318_050 Hb_000767_010 Hb_000767_010 Hb_003077_140--Hb_000767_010 Hb_003077_140--Hb_033153_040 Hb_123560_050 Hb_123560_050 Hb_003077_140--Hb_123560_050 Hb_001357_360 Hb_001357_360 Hb_003077_140--Hb_001357_360 Hb_002818_070 Hb_002818_070 Hb_003077_140--Hb_002818_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0184229 10.8967 7.33805 6.43292 0.0313466 0.0664945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0186825 0 0.0279944 6.69261 9.48807

CAGE analysis