Hb_005488_030

Information

Type -
Description -
Location Contig5488: 36635-53021
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_316741
description F3F9.11
nr
ID XP_002889189.1
description F3F9.11 [Arabidopsis lyrata subsp. lyrata]
swissprot
ID P32110
description Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1
trembl
ID D7KVA3
description F3F9.11 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_316741 PE=4 SV=1
Gene Ontology
ID GO:0016740
description glutathione s-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48106: 33737-36021 , PASA_asmbl_48107: 36856-37507 , PASA_asmbl_48109: 50973-51589
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005488_030 0.0 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]
2 Hb_001706_020 0.0850012297 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
3 Hb_001956_080 0.0882680922 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
4 Hb_007747_100 0.0957755433 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]
5 Hb_000215_290 0.0972221362 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
6 Hb_001153_090 0.098685543 - - PREDICTED: protein FAM63A [Jatropha curcas]
7 Hb_023344_130 0.1109754415 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
8 Hb_010880_010 0.1112276119 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
9 Hb_000025_590 0.1155569152 - - PREDICTED: cytochrome P450 94A1-like isoform X1 [Jatropha curcas]
10 Hb_001174_030 0.115829828 - - unnamed protein product [Vitis vinifera]
11 Hb_143629_200 0.1180233402 - - hypothetical protein POPTR_0013s00300g [Populus trichocarpa]
12 Hb_001544_070 0.1212219873 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
13 Hb_000477_110 0.1215583641 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
14 Hb_000472_020 0.1217635069 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
15 Hb_006970_170 0.1229333788 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
16 Hb_000398_140 0.1231756149 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
17 Hb_001160_020 0.1257545369 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
18 Hb_004421_010 0.1258352028 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
19 Hb_001883_010 0.1266484975 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
20 Hb_003849_030 0.1279288456 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]

Gene co-expression network

sample Hb_005488_030 Hb_005488_030 Hb_001706_020 Hb_001706_020 Hb_005488_030--Hb_001706_020 Hb_001956_080 Hb_001956_080 Hb_005488_030--Hb_001956_080 Hb_007747_100 Hb_007747_100 Hb_005488_030--Hb_007747_100 Hb_000215_290 Hb_000215_290 Hb_005488_030--Hb_000215_290 Hb_001153_090 Hb_001153_090 Hb_005488_030--Hb_001153_090 Hb_023344_130 Hb_023344_130 Hb_005488_030--Hb_023344_130 Hb_001706_020--Hb_000215_290 Hb_001174_030 Hb_001174_030 Hb_001706_020--Hb_001174_030 Hb_143629_200 Hb_143629_200 Hb_001706_020--Hb_143629_200 Hb_001544_070 Hb_001544_070 Hb_001706_020--Hb_001544_070 Hb_000472_020 Hb_000472_020 Hb_001706_020--Hb_000472_020 Hb_000477_110 Hb_000477_110 Hb_001956_080--Hb_000477_110 Hb_001956_080--Hb_001153_090 Hb_004421_010 Hb_004421_010 Hb_001956_080--Hb_004421_010 Hb_001956_080--Hb_023344_130 Hb_001956_080--Hb_007747_100 Hb_001160_020 Hb_001160_020 Hb_007747_100--Hb_001160_020 Hb_007747_100--Hb_001153_090 Hb_006269_010 Hb_006269_010 Hb_007747_100--Hb_006269_010 Hb_002849_120 Hb_002849_120 Hb_007747_100--Hb_002849_120 Hb_144703_010 Hb_144703_010 Hb_000215_290--Hb_144703_010 Hb_000025_590 Hb_000025_590 Hb_000215_290--Hb_000025_590 Hb_000215_290--Hb_143629_200 Hb_000215_290--Hb_001174_030 Hb_001153_090--Hb_006269_010 Hb_001153_090--Hb_002849_120 Hb_001153_090--Hb_023344_130 Hb_001153_090--Hb_001160_020 Hb_003077_140 Hb_003077_140 Hb_001153_090--Hb_003077_140 Hb_006788_100 Hb_006788_100 Hb_023344_130--Hb_006788_100 Hb_023344_130--Hb_001160_020 Hb_002078_240 Hb_002078_240 Hb_023344_130--Hb_002078_240 Hb_000501_040 Hb_000501_040 Hb_023344_130--Hb_000501_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0237651 3.37874 2.87339 3.08492 0 0.00692517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0719229 0.0282975 0.134818 2.73654 4.05859

CAGE analysis